Lutjanus fulviflamma
Black spot snapper
GC content
46.78%
Whole genome
Non-coding
905 bp
D-loop 840 bp
Where Black spot snapper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Black spot snapper has the 739th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,512 bp
- GC skew (G − C) / (G + C)
- −0.309
- AT skew (A − T) / (A + T)
- +0.056
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,512 bp
Protein-coding11,400 bp
12S rRNA950 bp
16S rRNA1,697 bp
All tRNA1,563 bp
D-loop840 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.54% | −0.375 | −0.065 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.42% | −0.518 | +0.076 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 46.08% | −0.208 | −0.073 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.305 | +0.058 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.550 | +0.091 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 47.29% | −0.449 | −0.022 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.79% | −0.311 | −0.030 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.357 | −0.292 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.436 | −0.081 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.67% | −0.402 | +0.013 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.22% | −0.426 | +0.050 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.438 | +0.479 | |||||
| CYTBCytochrome b | 1,141 bp | 48.12% | −0.384 | −0.041 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 47.79% | −0.084 | +0.185 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 46.38% | −0.151 | +0.235 | |||||
| D-loopControl region (D-loop) | 840 bp | 37.38% | −0.178 | +0.038 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU93
UUC140
Leu L17.7%
UUA61
UUG16
CUU149
CUC178
CUA221
CUG48
Ile I7.0%
AUU119
AUC148
Met M4.0%
AUA80
AUG74
Val V5.7%
GUU70
GUC70
GUA53
GUG23
Ser S6.4%
UCU42
UCC81
UCA56
UCG9
AGU10
AGC44
Pro P5.9%
CCU54
CCC111
CCA55
CCG4
Thr T7.8%
ACU38
ACC134
ACA112
ACG13
Ala A9.1%
GCU61
GCC170
GCA104
GCG12
Tyr Y2.9%
UAU32
UAC78
His H2.8%
CAU23
CAC82
Gln Q2.6%
CAA90
CAG10
Asn N3.2%
AAU24
AAC97
Lys K1.9%
AAA71
AAG3
Asp D1.9%
GAU18
GAC54
Glu E2.7%
GAA76
GAG25
Cys C0.6%
UGU6
UGC18
Trp W3.2%
UGA106
UGG14
Arg R2.0%
CGU14
CGC13
CGA41
CGG7
Gly G6.4%
GGU30
GGC80
GGA97
GGG36
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_043916.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,020 | 950 bp | + | 47.8% |
| tRNA-Val | Transfer RNA | 1,021 | 1,093 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,790 | 1,697 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,791 | 2,864 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 49.5% |
| tRNA-Ile | Transfer RNA | 3,843 | 3,912 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,912 | 3,982 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,051 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 48.4% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,168 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,237 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,344 | 5,414 | 71 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,483 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,491 | 7,035 | 1,545 bp | + | 46.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,038 | 7,106 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,111 | 7,182 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,190 | 7,880 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,881 | 7,956 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,957 | 8,124 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,115 | 8,797 | 683 bp | + | 47.3% |
| COX3 | Protein-coding gene | 8,798 | 9,582 | 785 bp | + | 48.8% |
| tRNA-Gly | Transfer RNA | 9,583 | 9,654 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,655 | 10,003 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 10,003 | 10,073 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,073 | 10,369 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,363 | 11,743 | 1,381 bp | + | 49.7% |
| tRNA-His | Transfer RNA | 11,744 | 11,812 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,813 | 11,882 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,886 | 11,958 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,959 | 13,797 | 1,839 bp | + | 46.2% |
| ND6 | Protein-coding gene | 13,794 | 14,315 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,316 | 14,384 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,391 | 15,531 | 1,141 bp | + | 48.1% |
| tRNA-Thr | Transfer RNA | 15,532 | 15,604 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,672 | 70 bp | − | – |
| D-loop | Control region | 15,673 | 16,512 | 840 bp | – | 37.4% |