Lutjanus kasmira
Common bluestripe snapper
GC content
47.15%
Whole genome
Non-coding
905 bp
D-loop 839 bp
Where Common bluestripe snapper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Common bluestripe snapper has the 1,939th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,514 bp
- GC skew (G − C) / (G + C)
- −0.308
- AT skew (A − T) / (A + T)
- +0.054
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,514 bp
Protein-coding11,407 bp
12S rRNA952 bp
16S rRNA1,698 bp
All tRNA1,552 bp
D-loop839 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.41% | −0.369 | −0.050 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 50.38% | −0.499 | +0.083 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.16% | −0.201 | −0.056 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.291 | +0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.542 | +0.106 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.37% | −0.432 | −0.050 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.81% | −0.309 | −0.010 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.29% | −0.419 | −0.235 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 52.53% | −0.436 | −0.021 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.88% | −0.399 | +0.011 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.98% | −0.428 | +0.036 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.425 | +0.478 | |||||
| CYTBCytochrome b | 1,141 bp | 48.29% | −0.383 | −0.034 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 48.00% | −0.098 | +0.192 | |||||
| 16S rRNA16S ribosomal RNA | 1,698 bp | 47.53% | −0.147 | +0.232 | |||||
| D-loopControl region (D-loop) | 839 bp | 36.71% | −0.221 | +0.017 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU71
UUC161
Leu L17.6%
UUA55
UUG17
CUU132
CUC202
CUA201
CUG63
Ile I7.0%
AUU133
AUC135
Met M4.0%
AUA67
AUG87
Val V5.8%
GUU62
GUC71
GUA64
GUG22
Ser S6.4%
UCU36
UCC81
UCA66
UCG7
AGU8
AGC44
Pro P5.9%
CCU66
CCC100
CCA51
CCG6
Thr T7.9%
ACU51
ACC124
ACA115
ACG10
Ala A9.1%
GCU61
GCC168
GCA102
GCG15
Tyr Y2.9%
UAU33
UAC78
His H2.8%
CAU24
CAC82
Gln Q2.6%
CAA89
CAG9
Asn N3.2%
AAU24
AAC97
Lys K1.9%
AAA72
AAG2
Asp D1.9%
GAU14
GAC58
Glu E2.7%
GAA78
GAG23
Cys C0.6%
UGU5
UGC19
Trp W3.2%
UGA109
UGG11
Arg R2.0%
CGU10
CGC16
CGA48
CGG2
Gly G6.4%
GGU25
GGC81
GGA91
GGG46
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_011578.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,020 | 952 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,790 | 1,698 bp | + | 47.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,791 | 2,864 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,865 | 3,839 | 975 bp | + | 48.4% |
| tRNA-Ile | Transfer RNA | 3,843 | 3,912 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,912 | 3,982 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,096 | 1,046 bp | + | 50.4% |
| tRNA-Trp | Transfer RNA | 5,097 | 5,168 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,169 | 5,237 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,239 | 5,311 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,351 | 5,417 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,418 | 5,487 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,489 | 7,039 | 1,551 bp | + | 46.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,041 | 7,111 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,115 | 7,186 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,884 | 7,958 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,960 | 8,127 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,118 | 8,801 | 684 bp | + | 47.4% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 49.8% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,657 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 51.3% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,075 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,076 | 10,372 | 297 bp | + | 52.5% |
| ND4 | Protein-coding gene | 10,366 | 11,746 | 1,381 bp | + | 48.9% |
| tRNA-His | Transfer RNA | 11,747 | 11,815 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,816 | 11,883 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,961 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,800 | 1,839 bp | + | 47.0% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,394 | 15,534 | 1,141 bp | + | 48.3% |
| tRNA-Thr | Transfer RNA | 15,535 | 15,606 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,606 | 15,675 | 70 bp | − | – |
| D-loop | Control region | 15,676 | 16,514 | 839 bp | – | 36.7% |