Lutjanus malabaricus

Malabar blood snapper

Maximum lifespan

31 yr

AnAge record

mtDNA size

16,526 bp

RefSeq NC_012736.1

GC content

47.13%

Whole genome

Non-coding

908 bp

D-loop 844 bp

Where Malabar blood snapper sits among 2,335 species

Whole-genome GC content against maximum lifespan. Malabar blood snapper has the 414th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,526 bp

GC skew (G − C) / (G + C): −0.309
AT skew (A − T) / (A + T): +0.052

Life history

Maximum lifespan: 31 years
Adult weight: 4.4 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04227)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,526 bp

Protein-coding11,408 bp

12S rRNA951 bp

16S rRNA1,699 bp

All tRNA1,560 bp

D-loop844 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Lutjanus malabaricus genes

ND1NADH dehydrogenase subunit 1	975 bp	24.1%	27.3%	15.0%	33.6%	48.62%	−0.384	−0.062
ND2NADH dehydrogenase subunit 2	1,046 bp	27.0%	23.6%	11.5%	38.0%	49.43%	−0.536	+0.066
COX1Cytochrome c oxidase subunit I	1,551 bp	23.7%	28.6%	20.1%	27.6%	47.65%	−0.158	−0.094
COX2Cytochrome c oxidase subunit II	691 bp	28.7%	25.8%	16.1%	29.5%	45.59%	−0.295	+0.053
ATP8ATP synthase F0 subunit 8	168 bp	28.0%	23.2%	11.9%	36.9%	48.81%	−0.512	+0.093
ATP6ATP synthase F0 subunit 6	684 bp	24.0%	28.7%	13.0%	34.4%	47.37%	−0.451	−0.089
COX3Cytochrome c oxidase subunit III	785 bp	24.6%	24.8%	16.7%	33.9%	50.57%	−0.340	−0.005
ND3NADH dehydrogenase subunit 3	349 bp	19.5%	28.9%	13.8%	37.8%	51.58%	−0.467	−0.195
ND4LNADH dehydrogenase subunit 4L	297 bp	23.2%	25.6%	14.5%	36.7%	51.18%	−0.434	−0.048
ND4NADH dehydrogenase subunit 4	1,381 bp	25.8%	24.9%	15.1%	34.3%	49.31%	−0.389	+0.017
ND5NADH dehydrogenase subunit 5	1,839 bp	28.1%	25.6%	12.9%	33.3%	46.22%	−0.442	+0.047
ND6NADH dehydrogenase subunit 6	522 bp	38.1%	14.0%	13.8%	34.1%	47.89%	−0.424	+0.463
CYTBCytochrome b	1,142 bp	25.4%	26.9%	14.4%	33.3%	47.72%	−0.395	−0.028
12S rRNA12S ribosomal RNA	951 bp	30.1%	21.8%	21.8%	26.4%	48.16%	−0.096	+0.160
16S rRNA16S ribosomal RNA	1,699 bp	32.5%	20.5%	20.0%	27.0%	46.97%	−0.148	+0.225
D-loopControl region (D-loop)	844 bp	33.8%	29.9%	15.2%	21.2%	36.37%	−0.166	+0.061

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU86

UUC145

Leu L17.9%

UUA50

UUG17

CUU171

CUC178

CUA209

CUG56

Ile I6.9%

AUU120

AUC144

Met M3.9%

AUA85

AUG65

Val V5.7%

GUU65

GUC71

GUA60

GUG19

Ser S6.4%

UCU36

UCC85

UCA64

UCG4

AGU12

AGC42

Pro P5.9%

CCU43

CCC120

CCA53

CCG7

Thr T8.0%

ACU44

ACC141

ACA102

ACG16

Ala A8.9%

GCU54

GCC160

GCA107

GCG19

Tyr Y2.9%

UAU29

UAC81

His H2.8%

CAU21

CAC86

Gln Q2.6%

CAA86

CAG12

Asn N3.1%

AAU33

AAC86

Lys K2.0%

AAA71

AAG4

Asp D1.9%

GAU17

GAC55

Glu E2.7%

GAA80

GAG22

Cys C0.7%

UGU8

UGC18

Trp W3.2%

UGA107

UGG13

Arg R1.9%

CGU8

CGC16

CGA41

CGG9

Gly G6.4%

GGU18

GGC98

GGA83

GGG46

Stop 0.2%

UAA4

UAG3

AGA0

AGG0

Genome map

38 annotated features in NC_012736.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Lutjanus malabaricus (NC_012736.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,019	951 bp	+	48.2%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,790	1,699 bp	+	47.0%
tRNA-Leu (UUR)	Transfer RNA	2,791	2,864	74 bp	+	–
ND1	Protein-coding gene	2,865	3,839	975 bp	+	48.6%
tRNA-Ile	Transfer RNA	3,843	3,912	70 bp	+	–
tRNA-Gln	Transfer RNA	3,912	3,982	71 bp	−	–
tRNA-Met	Transfer RNA	3,982	4,050	69 bp	+	–
ND2	Protein-coding gene	4,051	5,096	1,046 bp	+	49.4%
tRNA-Trp	Transfer RNA	5,097	5,168	72 bp	+	–
tRNA-Ala	Transfer RNA	5,169	5,237	69 bp	−	–
tRNA-Asn	Transfer RNA	5,239	5,311	73 bp	−	–
tRNA-Cys	Transfer RNA	5,351	5,417	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,418	5,487	70 bp	−	–
COX1	Protein-coding gene	5,489	7,039	1,551 bp	+	47.7%
tRNA-Ser (UCN)	Transfer RNA	7,041	7,111	71 bp	−	–
tRNA-Asp	Transfer RNA	7,115	7,186	72 bp	+	–
COX2	Protein-coding gene	7,194	7,884	691 bp	+	45.6%
tRNA-Lys	Transfer RNA	7,885	7,960	76 bp	+	–
ATP8	Protein-coding gene	7,962	8,129	168 bp	+	48.8%
ATP6	Protein-coding gene	8,120	8,803	684 bp	+	47.4%
COX3	Protein-coding gene	8,803	9,587	785 bp	+	50.6%
tRNA-Gly	Transfer RNA	9,588	9,659	72 bp	+	–
ND3	Protein-coding gene	9,660	10,008	349 bp	+	51.6%
tRNA-Arg	Transfer RNA	10,009	10,077	69 bp	+	–
ND4L	Protein-coding gene	10,078	10,374	297 bp	+	51.2%
ND4	Protein-coding gene	10,368	11,748	1,381 bp	+	49.3%
tRNA-His	Transfer RNA	11,749	11,817	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,818	11,890	73 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,891	11,963	73 bp	+	–
ND5	Protein-coding gene	11,964	13,802	1,839 bp	+	46.2%
ND6	Protein-coding gene	13,799	14,320	522 bp	−	47.9%
tRNA-Glu	Transfer RNA	14,322	14,390	69 bp	−	–
CYTB	Protein-coding gene	14,398	15,539	1,142 bp	+	47.7%
tRNA-Thr	Transfer RNA	15,540	15,612	73 bp	+	–
tRNA-Pro	Transfer RNA	15,612	15,682	71 bp	−	–
D-loop	Control region	15,683	16,526	844 bp	–	36.4%