MitoAge

Lutjanus sebae

Emperor snapper

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Maximum lifespan
35 yr
AnAge record
mtDNA size
16,512 bp
RefSeq NC_012737.1
GC content
46.28%
Whole genome
Non-coding
895 bp
D-loop 830 bp

Where Emperor snapper sits among 2,335 species

Whole-genome GC content against maximum lifespan. Emperor snapper has the 328th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Emperor snapper
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,512 bp
GC skew (G − C) / (G + C)
−0.307
AT skew (A − T) / (A + T)
+0.053

Life history

Maximum lifespan
35 years
Adult weight
18 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04232)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,512 bp
Protein-coding11,408 bp
12S rRNA951 bp
16S rRNA1,699 bp
All tRNA1,560 bp
D-loop830 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp24.9%28.1%15.3%31.7%46.97%−0.349−0.060
ND2NADH dehydrogenase subunit 21,046 bp28.2%24.7%11.1%36.0%47.13%−0.529+0.067
COX1Cytochrome c oxidase subunit I1,551 bp24.8%28.8%18.6%27.9%46.49%−0.201−0.075
COX2Cytochrome c oxidase subunit II691 bp28.5%27.4%16.1%28.1%44.14%−0.272+0.021
ATP8ATP synthase F0 subunit 8168 bp29.8%26.8%9.5%33.9%43.45%−0.562+0.053
ATP6ATP synthase F0 subunit 6684 bp26.3%29.1%12.1%32.5%44.59%−0.456−0.050
COX3Cytochrome c oxidase subunit III785 bp25.5%25.9%16.7%32.0%48.66%−0.314−0.007
ND3NADH dehydrogenase subunit 3349 bp19.8%29.5%12.9%37.8%50.72%−0.492−0.198
ND4LNADH dehydrogenase subunit 4L297 bp25.3%26.6%13.1%35.0%48.15%−0.455−0.026
ND4NADH dehydrogenase subunit 41,381 bp27.0%25.7%14.5%32.8%47.29%−0.387+0.025
ND5NADH dehydrogenase subunit 51,839 bp28.0%25.5%13.5%33.0%46.49%−0.420+0.047
ND6NADH dehydrogenase subunit 6522 bp38.1%14.0%13.8%34.1%47.89%−0.424+0.463
CYTBCytochrome b1,142 bp25.4%27.4%14.4%32.8%47.20%−0.391−0.038
12S rRNA12S ribosomal RNA951 bp31.0%21.0%21.6%26.4%47.95%−0.101+0.192
16S rRNA16S ribosomal RNA1,699 bp32.4%20.2%20.0%27.4%47.38%−0.158+0.230
D-loopControl region (D-loop)830 bp32.7%31.1%15.2%21.1%36.27%−0.163+0.025

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU102
UUC127
Leu L17.8%
UUA75
UUG20
CUU145
CUC183
CUA210
CUG43
Ile I7.1%
AUU135
AUC134
Met M4.0%
AUA94
AUG57
Val V5.5%
GUU61
GUC68
GUA60
GUG19
Ser S6.3%
UCU34
UCC86
UCA62
UCG6
AGU11
AGC42
Pro P5.8%
CCU55
CCC102
CCA55
CCG9
Thr T8.0%
ACU64
ACC118
ACA116
ACG8
Ala A9.1%
GCU52
GCC156
GCA122
GCG15
Tyr Y3.0%
UAU41
UAC72
His H2.9%
CAU28
CAC81
Gln Q2.6%
CAA89
CAG10
Asn N3.2%
AAU27
AAC93
Lys K2.0%
AAA69
AAG6
Asp D1.9%
GAU16
GAC58
Glu E2.6%
GAA78
GAG20
Cys C0.7%
UGU4
UGC21
Trp W3.2%
UGA107
UGG14
Arg R2.0%
CGU9
CGC15
CGA42
CGG9
Gly G6.4%
GGU31
GGC85
GGA88
GGG41
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_012737.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,019951 bp+48.0%
tRNA-ValTransfer RNA1,0211,09272 bp+–
16S rRNARibosomal RNA1,0932,7911,699 bp+47.4%
tRNA-Leu (UUR)Transfer RNA2,7922,86574 bp+–
ND1Protein-coding gene2,8663,840975 bp+47.0%
tRNA-IleTransfer RNA3,8443,91370 bp+–
tRNA-GlnTransfer RNA3,9133,98371 bp−–
tRNA-MetTransfer RNA3,9834,05169 bp+–
ND2Protein-coding gene4,0525,0971,046 bp+47.1%
tRNA-TrpTransfer RNA5,0985,16972 bp+–
tRNA-AlaTransfer RNA5,1705,23869 bp−–
tRNA-AsnTransfer RNA5,2405,31273 bp−–
tRNA-CysTransfer RNA5,3525,41867 bp−–
tRNA-TyrTransfer RNA5,4195,48870 bp−–
COX1Protein-coding gene5,4907,0401,551 bp+46.5%
tRNA-Ser (UCN)Transfer RNA7,0427,11271 bp−–
tRNA-AspTransfer RNA7,1167,18772 bp+–
COX2Protein-coding gene7,1957,885691 bp+44.1%
tRNA-LysTransfer RNA7,8867,96176 bp+–
ATP8Protein-coding gene7,9638,130168 bp+43.5%
ATP6Protein-coding gene8,1218,804684 bp+44.6%
COX3Protein-coding gene8,8049,588785 bp+48.7%
tRNA-GlyTransfer RNA9,5899,66072 bp+–
ND3Protein-coding gene9,66110,009349 bp+50.7%
tRNA-ArgTransfer RNA10,01010,07869 bp+–
ND4LProtein-coding gene10,07910,375297 bp+48.2%
ND4Protein-coding gene10,36911,7491,381 bp+47.3%
tRNA-HisTransfer RNA11,75011,81869 bp+–
tRNA-Ser (AGY)Transfer RNA11,81911,89173 bp+–
tRNA-Leu (CUN)Transfer RNA11,89211,96473 bp+–
ND5Protein-coding gene11,96513,8031,839 bp+46.5%
ND6Protein-coding gene13,80014,321522 bp−47.9%
tRNA-GluTransfer RNA14,32314,39169 bp−–
CYTBProtein-coding gene14,39915,5401,142 bp+47.2%
tRNA-ThrTransfer RNA15,54015,61273 bp+–
tRNA-ProTransfer RNA15,61215,68271 bp−–
D-loopControl region15,68316,512830 bp–36.3%

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