Lutjanus vitta
Blackstriped snapper
GC content
46.64%
Whole genome
Non-coding
888 bp
D-loop 830 bp
Where Blackstriped snapper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blackstriped snapper has the 1,446th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,498 bp
- GC skew (G − C) / (G + C)
- −0.298
- AT skew (A − T) / (A + T)
- +0.051
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,498 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,697 bp
All tRNA1,562 bp
D-loop830 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.64% | −0.364 | −0.039 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.52% | −0.502 | +0.083 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.78% | −0.169 | −0.080 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.57% | −0.305 | +0.044 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.519 | +0.056 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.32% | −0.426 | −0.080 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.77% | −0.307 | −0.034 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.418 | −0.185 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.425 | −0.083 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.31% | −0.401 | +0.020 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.11% | −0.415 | +0.047 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.40% | −0.392 | +0.446 | |||||
| CYTBCytochrome b | 1,141 bp | 48.55% | −0.375 | −0.043 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.73% | −0.080 | +0.184 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 47.14% | −0.153 | +0.235 | |||||
| D-loopControl region (D-loop) | 830 bp | 36.75% | −0.148 | +0.013 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU96
UUC137
Leu L17.7%
UUA74
UUG10
CUU154
CUC168
CUA219
CUG49
Ile I7.0%
AUU126
AUC139
Met M4.0%
AUA71
AUG83
Val V5.7%
GUU65
GUC69
GUA65
GUG19
Ser S6.4%
UCU46
UCC76
UCA55
UCG10
AGU10
AGC45
Pro P5.9%
CCU50
CCC113
CCA52
CCG9
Thr T7.9%
ACU45
ACC121
ACA123
ACG13
Ala A9.0%
GCU51
GCC168
GCA110
GCG13
Tyr Y2.9%
UAU35
UAC75
His H2.8%
CAU22
CAC86
Gln Q2.6%
CAA84
CAG14
Asn N3.1%
AAU28
AAC91
Lys K1.9%
AAA70
AAG4
Asp D1.9%
GAU18
GAC56
Glu E2.7%
GAA82
GAG19
Cys C0.6%
UGU6
UGC18
Trp W3.2%
UGA105
UGG15
Arg R2.0%
CGU15
CGC12
CGA44
CGG4
Gly G6.4%
GGU22
GGC93
GGA81
GGG47
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_042930.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,016 | 947 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,017 | 1,089 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,786 | 1,697 bp | + | 47.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,860 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 49.6% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,908 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,908 | 3,978 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,047 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,047 | 5,092 | 1,046 bp | + | 49.5% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,164 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,233 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,410 | 71 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,479 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,034 | 7,102 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,178 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 45.3% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 47.8% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,069 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 49.3% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,879 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,882 | 11,954 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,955 | 13,793 | 1,839 bp | + | 46.1% |
| ND6 | Protein-coding gene | 13,790 | 14,311 | 522 bp | − | 45.4% |
| tRNA-Glu | Transfer RNA | 14,312 | 14,380 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,527 | 1,141 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 15,528 | 15,600 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,599 | 15,668 | 70 bp | − | – |
| D-loop | Control region | 15,669 | 16,498 | 830 bp | – | 36.8% |