Luxilus chrysocephalus
Striped shiner
GC content
44.76%
Whole genome
Non-coding
1,110 bp
D-loop 1,056 bp
Where Striped shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Striped shiner has the 2,089th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,718 bp
- GC skew (G − C) / (G + C)
- −0.199
- AT skew (A − T) / (A + T)
- +0.028
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,718 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,684 bp
All tRNA1,563 bp
D-loop1,056 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.80% | −0.227 | −0.088 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.76% | −0.300 | −0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.75% | −0.155 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.215 | +0.047 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.516 | +0.165 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 42.75% | −0.301 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.17% | −0.188 | −0.052 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.69% | −0.221 | −0.070 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.244 | −0.111 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 44.14% | −0.282 | −0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.28% | −0.260 | −0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.36% | −0.347 | +0.329 | |||||
| CYTBCytochrome b | 1,141 bp | 45.93% | −0.275 | −0.037 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 49.90% | −0.075 | +0.225 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 45.01% | −0.032 | +0.238 | |||||
| D-loopControl region (D-loop) | 1,056 bp | 35.42% | −0.219 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU107
UUC119
Leu L16.5%
UUA112
UUG44
CUU135
CUC111
CUA162
CUG62
Ile I6.8%
AUU183
AUC74
Met M4.6%
AUA109
AUG67
Val V6.7%
GUU66
GUC50
GUA100
GUG38
Ser S6.3%
UCU34
UCC65
UCA78
UCG8
AGU11
AGC45
Pro P5.7%
CCU50
CCC63
CCA92
CCG10
Thr T7.8%
ACU58
ACC101
ACA118
ACG18
Ala A9.4%
GCU67
GCC140
GCA125
GCG26
Tyr Y3.0%
UAU51
UAC62
His H2.8%
CAU39
CAC66
Gln Q2.6%
CAA75
CAG23
Asn N2.9%
AAU47
AAC63
Lys K2.1%
AAA55
AAG24
Asp D2.0%
GAU25
GAC52
Glu E2.6%
GAA61
GAG39
Cys C0.7%
UGU8
UGC19
Trp W3.2%
UGA96
UGG24
Arg R2.0%
CGU15
CGC13
CGA38
CGG11
Gly G6.4%
GGU34
GGC64
GGA97
GGG49
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_033923.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 49.9% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,783 | 1,684 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,859 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 47.8% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,911 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,982 | 4,050 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,051 | 5,095 | 1,045 bp | + | 49.8% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,166 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,168 | 5,236 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,409 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,180 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,953 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,955 | 8,119 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,113 | 8,795 | 683 bp | + | 42.8% |
| COX3 | Protein-coding gene | 8,796 | 9,579 | 784 bp | + | 46.2% |
| tRNA-Gly | Transfer RNA | 9,580 | 9,651 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,652 | 10,000 | 349 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 10,001 | 10,069 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,360 | 11,741 | 1,382 bp | + | 44.1% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,878 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,880 | 11,952 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,953 | 13,788 | 1,836 bp | + | 44.3% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 46.4% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 45.9% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,662 | 71 bp | − | – |
| D-loop | Control region | 15,663 | 16,718 | 1,056 bp | – | 35.4% |