Luxilus cornutus
Common shiner
GC content
44.93%
Whole genome
Non-coding
1,109 bp
D-loop 1,056 bp
Where Common shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Common shiner has the 2,090th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,717 bp
- GC skew (G − C) / (G + C)
- −0.197
- AT skew (A − T) / (A + T)
- +0.023
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,717 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,683 bp
All tRNA1,564 bp
D-loop1,056 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.228 | −0.105 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.90% | −0.292 | −0.019 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.75% | −0.164 | −0.081 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.39% | −0.203 | +0.042 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.516 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.34% | −0.324 | −0.054 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.56% | −0.200 | −0.060 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.247 | −0.091 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.319 | −0.062 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.22% | −0.238 | −0.081 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 43.79% | −0.254 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.352 | +0.338 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.283 | −0.051 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.31% | −0.075 | +0.244 | |||||
| 16S rRNA16S ribosomal RNA | 1,683 bp | 45.16% | −0.037 | +0.233 | |||||
| D-loopControl region (D-loop) | 1,056 bp | 36.46% | −0.195 | +0.013 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU99
UUC127
Leu L16.5%
UUA119
UUG40
CUU136
CUC114
CUA165
CUG53
Ile I6.8%
AUU171
AUC88
Met M4.6%
AUA101
AUG74
Val V6.7%
GUU69
GUC49
GUA100
GUG37
Ser S6.3%
UCU43
UCC61
UCA71
UCG11
AGU12
AGC43
Pro P5.6%
CCU62
CCC51
CCA95
CCG6
Thr T7.7%
ACU59
ACC104
ACA109
ACG21
Ala A9.3%
GCU63
GCC144
GCA119
GCG29
Tyr Y3.0%
UAU57
UAC57
His H2.7%
CAU33
CAC71
Gln Q2.6%
CAA79
CAG19
Asn N3.0%
AAU47
AAC66
Lys K2.1%
AAA56
AAG23
Asp D2.0%
GAU26
GAC49
Glu E2.7%
GAA60
GAG41
Cys C0.7%
UGU11
UGC16
Trp W3.2%
UGA92
UGG28
Arg R2.0%
CGU13
CGC15
CGA38
CGG11
Gly G6.4%
GGU41
GGC62
GGA83
GGG59
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_033931.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,782 | 1,683 bp | + | 45.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,858 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,910 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 48.9% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,407 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 42.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,178 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 41.4% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,951 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,117 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,111 | 8,793 | 683 bp | + | 43.3% |
| COX3 | Protein-coding gene | 8,794 | 9,577 | 784 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,358 | 11,739 | 1,382 bp | + | 45.2% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,877 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,871 | 11,951 | 81 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,787 | 1,836 bp | + | 43.8% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,661 | 71 bp | − | – |
| D-loop | Control region | 15,662 | 16,717 | 1,056 bp | – | 36.5% |