Luxilus zonatus
Bleeding shiner
GC content
44.79%
Whole genome
Non-coding
1,107 bp
D-loop 1,053 bp
Where Bleeding shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bleeding shiner has the 2,195th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,716 bp
- GC skew (G − C) / (G + C)
- −0.202
- AT skew (A − T) / (A + T)
- +0.029
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,716 bp
Protein-coding11,405 bp
12S rRNA958 bp
16S rRNA1,683 bp
All tRNA1,564 bp
D-loop1,053 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.221 | −0.108 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.00% | −0.320 | +0.006 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.01% | −0.172 | −0.072 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.215 | +0.047 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 38.18% | −0.492 | +0.157 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.84% | −0.304 | −0.049 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.61% | −0.190 | −0.054 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 43.43% | −0.197 | −0.081 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 44.78% | −0.248 | −0.122 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 44.21% | −0.286 | −0.051 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.06% | −0.263 | −0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.344 | +0.338 | |||||
| CYTBCytochrome b | 1,141 bp | 45.49% | −0.276 | −0.035 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.10% | −0.067 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,683 bp | 44.74% | −0.033 | +0.243 | |||||
| D-loopControl region (D-loop) | 1,053 bp | 36.18% | −0.223 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU109
UUC117
Leu L16.5%
UUA116
UUG39
CUU133
CUC115
CUA167
CUG56
Ile I6.9%
AUU178
AUC85
Met M4.6%
AUA109
AUG67
Val V6.5%
GUU63
GUC51
GUA95
GUG39
Ser S6.3%
UCU34
UCC64
UCA77
UCG10
AGU13
AGC43
Pro P5.7%
CCU52
CCC61
CCA92
CCG10
Thr T7.8%
ACU62
ACC100
ACA122
ACG12
Ala A9.4%
GCU68
GCC139
GCA121
GCG29
Tyr Y3.0%
UAU49
UAC64
His H2.8%
CAU40
CAC65
Gln Q2.6%
CAA74
CAG24
Asn N2.9%
AAU45
AAC66
Lys K2.1%
AAA53
AAG26
Asp D2.0%
GAU25
GAC50
Glu E2.6%
GAA60
GAG40
Cys C0.7%
UGU11
UGC16
Trp W3.2%
UGA98
UGG22
Arg R2.0%
CGU14
CGC14
CGA35
CGG14
Gly G6.4%
GGU34
GGC66
GGA91
GGG54
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_080909.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,782 | 1,683 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,783 | 2,858 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,860 | 3,834 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,910 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,408 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 43.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,179 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,952 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,954 | 8,118 | 165 bp | + | 38.2% |
| ATP6 | Protein-coding gene | 8,112 | 8,795 | 684 bp | + | 42.8% |
| COX3 | Protein-coding gene | 8,795 | 9,579 | 785 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 10,000 | 350 bp | + | 43.4% |
| tRNA-Arg | Transfer RNA | 10,001 | 10,069 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 44.8% |
| ND4 | Protein-coding gene | 10,360 | 11,741 | 1,382 bp | + | 44.2% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,879 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,789 | 1,836 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,786 | 14,307 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,308 | 14,376 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,381 | 15,521 | 1,141 bp | + | 45.5% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,593 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,593 | 15,663 | 71 bp | − | – |
| D-loop | Control region | 15,664 | 16,716 | 1,053 bp | – | 36.2% |