Lycodon rufozonatus
Red barded snake
GC content
40.85%
Whole genome
Non-coding
2,167 bp
Including the D-loop
Where Red barded snake sits among 2,335 species
Whole-genome GC content against maximum lifespan. Red barded snake has the 1,324th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome17,188 bp
- GC skew (G − C) / (G + C)
- −0.383
- AT skew (A − T) / (A + T)
- +0.162
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,188 bp
Protein-coding11,188 bp
12S rRNA935 bp
16S rRNA1,475 bp
All tRNA1,425 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 964 bp | 41.81% | −0.494 | +0.173 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,030 bp | 39.42% | −0.581 | +0.269 | |||||
| COX1Cytochrome c oxidase subunit I | 1,546 bp | 44.18% | −0.253 | +0.010 | |||||
| COX2Cytochrome c oxidase subunit II | 685 bp | 44.96% | −0.279 | +0.220 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 35.22% | −0.643 | +0.243 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 39.79% | −0.513 | +0.215 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.15% | −0.299 | +0.126 | |||||
| ND3NADH dehydrogenase subunit 3 | 343 bp | 40.82% | −0.443 | +0.133 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 38.49% | −0.429 | +0.196 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,338 bp | 39.61% | −0.453 | +0.144 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,773 bp | 38.35% | −0.497 | +0.220 | |||||
| ND6NADH dehydrogenase subunit 6 | 498 bp | 38.15% | −0.642 | +0.552 | |||||
| CYTBCytochrome b | 1,117 bp | 39.66% | −0.481 | +0.068 | |||||
| 12S rRNA12S ribosomal RNA | 935 bp | 43.74% | −0.227 | +0.323 | |||||
| 16S rRNA16S ribosomal RNA | 1,475 bp | 39.53% | −0.197 | +0.309 |
Codon usage
Counts per codon, darker is more frequent3,734 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.4%
UUU86
UUC117
Leu L15.0%
UUA73
UUG25
CUU62
CUC69
CUA301
CUG30
Ile I8.2%
AUU147
AUC161
Met M7.3%
AUA240
AUG33
Val V4.5%
GUU39
GUC33
GUA70
GUG25
Ser S7.1%
UCU39
UCC61
UCA104
UCG8
AGU14
AGC38
Pro P5.2%
CCU18
CCC45
CCA118
CCG13
Thr T11.7%
ACU55
ACC164
ACA209
ACG9
Ala A6.1%
GCU34
GCC94
GCA92
GCG7
Tyr Y2.8%
UAU27
UAC77
His H2.8%
CAU18
CAC88
Gln Q2.6%
CAA87
CAG9
Asn N4.1%
AAU42
AAC111
Lys K2.7%
AAA96
AAG4
Asp D1.5%
GAU14
GAC41
Glu E2.5%
GAA81
GAG13
Cys C0.9%
UGU13
UGC20
Trp W2.6%
UGA90
UGG8
Arg R1.6%
CGU4
CGC14
CGA38
CGG5
Gly G5.2%
GGU25
GGC43
GGA85
GGG42
Stop 0.2%
UAA4
UAG0
AGA1
AGG1
Genome map
37 annotated features in NC_024559.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (40.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 66 | 66 bp | + | – |
| 12S rRNA | Ribosomal RNA | 65 | 999 | 935 bp | + | 43.7% |
| tRNA-Val | Transfer RNA | 1,000 | 1,063 | 64 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,064 | 2,538 | 1,475 bp | + | 39.5% |
| ND1 | Protein-coding gene | 2,539 | 3,502 | 964 bp | + | 41.8% |
| tRNA-Ile | Transfer RNA | 3,503 | 3,568 | 66 bp | + | – |
| tRNA-Leu (UUR) | Transfer RNA | 4,620 | 4,692 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,694 | 4,764 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,766 | 4,827 | 62 bp | + | – |
| ND2 | Protein-coding gene | 4,828 | 5,857 | 1,030 bp | + | 39.4% |
| tRNA-Trp | Transfer RNA | 5,858 | 5,922 | 65 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,924 | 5,988 | 65 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,989 | 6,060 | 72 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,096 | 6,156 | 61 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,156 | 6,217 | 62 bp | − | – |
| COX1 | Protein-coding gene | 6,219 | 7,764 | 1,546 bp | + | 44.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,811 | 7,876 | 66 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,877 | 7,939 | 63 bp | − | – |
| COX2 | Protein-coding gene | 7,940 | 8,624 | 685 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 8,625 | 8,687 | 63 bp | + | – |
| ATP8 | Protein-coding gene | 8,689 | 8,847 | 159 bp | + | 35.2% |
| ATP6 | Protein-coding gene | 8,838 | 9,518 | 681 bp | + | 39.8% |
| COX3 | Protein-coding gene | 9,518 | 10,301 | 784 bp | + | 45.2% |
| tRNA-Gly | Transfer RNA | 10,302 | 10,362 | 61 bp | + | – |
| ND3 | Protein-coding gene | 10,363 | 10,705 | 343 bp | + | 40.8% |
| tRNA-Arg | Transfer RNA | 10,706 | 10,770 | 65 bp | + | – |
| ND4L | Protein-coding gene | 10,771 | 11,061 | 291 bp | + | 38.5% |
| ND4 | Protein-coding gene | 11,061 | 12,398 | 1,338 bp | + | 39.6% |
| tRNA-His | Transfer RNA | 12,399 | 12,464 | 66 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,465 | 12,522 | 58 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,520 | 12,590 | 71 bp | + | – |
| ND5 | Protein-coding gene | 12,591 | 14,363 | 1,773 bp | + | 38.4% |
| ND6 | Protein-coding gene | 14,355 | 14,852 | 498 bp | − | 38.2% |
| tRNA-Glu | Transfer RNA | 14,862 | 14,923 | 62 bp | − | – |
| CYTB | Protein-coding gene | 14,924 | 16,040 | 1,117 bp | + | 39.7% |
| tRNA-Thr | Transfer RNA | 16,041 | 16,105 | 65 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,106 | 16,167 | 62 bp | − | – |