MitoAge

Lynx rufus

Bobcat

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Maximum lifespan
32.3 yr
AnAge record
mtDNA size
17,056 bp
RefSeq NC_014456.1
GC content
41.01%
Whole genome
Non-coding
1,671 bp
D-loop 1,607 bp

Where Bobcat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Bobcat has the 381st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Bobcat
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,056 bp
GC skew (G − C) / (G + C)
−0.304
AT skew (A − T) / (A + T)
+0.098

Life history

Maximum lifespan
32.3 years
Adult weight
8.6 kg
Birth weight
265 g
Basal metabolic rate
23.446 W
Female sexual maturity
365 days
Male sexual maturity
2 years
Gestation or incubation
65 days
Litter or clutch size
3
Litters per year
0.9
Postnatal growth rate
0.0068 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02125)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,056 bp
Protein-coding11,339 bp
12S rRNA960 bp
16S rRNA1,573 bp
All tRNA1,515 bp
D-loop1,607 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.7%24.9%12.2%31.2%43.41%−0.436+0.120
ND2NADH dehydrogenase subunit 21,042 bp36.7%24.2%9.1%30.0%39.16%−0.534+0.205
COX1Cytochrome c oxidase subunit I1,545 bp26.7%30.9%18.3%24.1%42.40%−0.136−0.074
COX2Cytochrome c oxidase subunit II684 bp32.5%27.0%14.6%25.9%40.50%−0.278+0.091
ATP8ATP synthase F0 subunit 8204 bp40.2%26.0%7.4%26.5%33.82%−0.565+0.215
ATP6ATP synthase F0 subunit 6681 bp30.2%29.2%12.2%28.3%40.53%−0.399+0.017
COX3Cytochrome c oxidase subunit III784 bp28.1%27.3%15.4%29.2%44.64%−0.309+0.014
ND3NADH dehydrogenase subunit 3347 bp30.8%28.5%12.7%28.0%40.63%−0.376+0.039
ND4LNADH dehydrogenase subunit 4L297 bp29.6%33.0%12.8%24.6%37.37%−0.315−0.054
ND4NADH dehydrogenase subunit 41,378 bp32.0%27.3%12.0%28.7%40.71%−0.408+0.080
ND5NADH dehydrogenase subunit 51,821 bp31.4%27.0%12.1%29.5%41.57%−0.419+0.075
ND6NADH dehydrogenase subunit 6528 bp40.2%22.7%9.7%27.5%37.12%−0.480+0.277
CYTBCytochrome b1,140 bp28.6%25.9%13.8%31.8%45.53%−0.395+0.050
12S rRNA12S ribosomal RNA960 bp36.3%22.2%17.8%23.8%41.56%−0.143+0.241
16S rRNA16S ribosomal RNA1,573 bp36.5%24.2%18.0%21.3%39.29%−0.084+0.202
D-loopControl region (D-loop)1,607 bp31.4%26.8%15.1%26.7%41.82%−0.277+0.078

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU87
UUC140
Leu L15.7%
UUA90
UUG20
CUU54
CUC104
CUA272
CUG56
Ile I8.9%
AUU145
AUC193
Met M6.4%
AUA179
AUG65
Val V4.9%
GUU33
GUC37
GUA94
GUG21
Ser S7.1%
UCU32
UCC67
UCA117
UCG9
AGU13
AGC33
Pro P5.2%
CCU48
CCC71
CCA74
CCG3
Thr T8.1%
ACU71
ACC96
ACA128
ACG14
Ala A6.8%
GCU41
GCC125
GCA85
GCG8
Tyr Y3.8%
UAU64
UAC79
His H2.5%
CAU33
CAC61
Gln Q2.4%
CAA78
CAG13
Asn N4.1%
AAU53
AAC104
Lys K2.7%
AAA90
AAG14
Asp D1.7%
GAU34
GAC32
Glu E2.6%
GAA71
GAG27
Cys C0.6%
UGU8
UGC16
Trp W2.7%
UGA91
UGG13
Arg R1.7%
CGU6
CGC10
CGA46
CGG4
Gly G5.8%
GGU34
GGC61
GGA97
GGG28
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_014456.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA89296170 bp+–
12S rRNARibosomal RNA9621,921960 bp+41.6%
tRNA-ValTransfer RNA1,9221,98968 bp+–
16S rRNARibosomal RNA1,9903,5621,573 bp+39.3%
tRNA-Leu (UUR)Transfer RNA3,5633,63775 bp+–
ND1Protein-coding gene3,6404,595956 bp+43.4%
tRNA-IleTransfer RNA4,5964,66469 bp+–
tRNA-GlnTransfer RNA4,6624,73574 bp−–
tRNA-MetTransfer RNA4,7374,80569 bp+–
ND2Protein-coding gene4,8065,8471,042 bp+39.2%
tRNA-TrpTransfer RNA5,8485,91568 bp+–
tRNA-AlaTransfer RNA5,9326,00069 bp−–
tRNA-AsnTransfer RNA6,0026,07473 bp−–
tRNA-CysTransfer RNA6,1076,17266 bp−–
tRNA-TyrTransfer RNA6,1736,23967 bp−–
COX1Protein-coding gene6,2417,7851,545 bp+42.4%
tRNA-Ser (UCN)Transfer RNA7,7847,85370 bp−–
tRNA-AspTransfer RNA7,8587,92669 bp+–
COX2Protein-coding gene7,9278,610684 bp+40.5%
tRNA-LysTransfer RNA8,6148,68168 bp+–
ATP8Protein-coding gene8,6838,886204 bp+33.8%
ATP6Protein-coding gene8,8449,524681 bp+40.5%
COX3Protein-coding gene9,52410,307784 bp+44.6%
tRNA-GlyTransfer RNA10,30810,37770 bp+–
ND3Protein-coding gene10,37810,724347 bp+40.6%
tRNA-ArgTransfer RNA10,72510,79369 bp+–
ND4LProtein-coding gene10,79411,090297 bp+37.4%
ND4Protein-coding gene11,08412,4611,378 bp+40.7%
tRNA-HisTransfer RNA12,46212,53069 bp+–
tRNA-Ser (AGY)Transfer RNA12,53112,58959 bp+–
tRNA-Leu (CUN)Transfer RNA12,59012,65970 bp+–
ND5Protein-coding gene12,66014,4801,821 bp+41.6%
ND6Protein-coding gene14,46414,991528 bp−37.1%
tRNA-GluTransfer RNA14,99215,06069 bp−–
CYTBProtein-coding gene15,06416,2031,140 bp+45.5%
tRNA-ThrTransfer RNA16,20416,27370 bp+–
tRNA-ProTransfer RNA16,27416,34067 bp−–
D-loopControl region16,3418911,607 bp–41.8%

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