Lythrurus umbratilis
Redfin shiner
GC content
44.39%
Whole genome
Non-coding
1,091 bp
D-loop 1,037 bp
Where Redfin shiner sits among 2,335 species
Whole-genome GC content against maximum lifespan. Redfin shiner has the 2,194th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,696 bp
- GC skew (G − C) / (G + C)
- −0.185
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,696 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,681 bp
All tRNA1,563 bp
D-loop1,037 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.08% | −0.203 | −0.143 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.33% | −0.240 | −0.059 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.07% | −0.162 | −0.099 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.39% | −0.182 | +0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.419 | +0.107 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 41.00% | −0.314 | −0.062 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.92% | −0.172 | −0.061 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.27% | −0.205 | −0.081 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.191 | −0.130 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.99% | −0.266 | −0.059 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.81% | −0.285 | −0.011 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.55% | −0.342 | +0.355 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.248 | −0.075 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.00% | −0.069 | +0.228 | |||||
| 16S rRNA16S ribosomal RNA | 1,681 bp | 45.33% | −0.026 | +0.219 | |||||
| D-loopControl region (D-loop) | 1,037 bp | 35.68% | −0.189 | +0.016 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU105
UUC121
Leu L16.5%
UUA119
UUG43
CUU155
CUC98
CUA148
CUG63
Ile I6.9%
AUU193
AUC70
Met M4.7%
AUA107
AUG71
Val V6.4%
GUU73
GUC39
GUA100
GUG31
Ser S6.3%
UCU44
UCC55
UCA70
UCG18
AGU11
AGC43
Pro P5.6%
CCU63
CCC51
CCA85
CCG14
Thr T7.9%
ACU61
ACC108
ACA112
ACG21
Ala A9.3%
GCU61
GCC145
GCA111
GCG36
Tyr Y3.0%
UAU58
UAC58
His H2.8%
CAU43
CAC62
Gln Q2.6%
CAA74
CAG24
Asn N2.9%
AAU60
AAC50
Lys K2.1%
AAA55
AAG24
Asp D2.1%
GAU27
GAC51
Glu E2.6%
GAA63
GAG35
Cys C0.7%
UGU13
UGC15
Trp W3.1%
UGA97
UGG22
Arg R2.0%
CGU15
CGC10
CGA39
CGG13
Gly G6.4%
GGU41
GGC61
GGA89
GGG54
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_033935.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,780 | 1,681 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,856 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 47.1% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,047 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,092 | 1,045 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,093 | 5,163 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,233 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,235 | 5,307 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,406 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,477 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,177 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,184 | 7,874 | 691 bp | + | 41.4% |
| tRNA-Lys | Transfer RNA | 7,875 | 7,950 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,116 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,110 | 8,792 | 683 bp | + | 41.0% |
| COX3 | Protein-coding gene | 8,793 | 9,576 | 784 bp | + | 45.9% |
| tRNA-Gly | Transfer RNA | 9,577 | 9,648 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 43.3% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,357 | 11,738 | 1,382 bp | + | 44.0% |
| tRNA-His | Transfer RNA | 11,739 | 11,807 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,808 | 11,876 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,950 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,951 | 13,786 | 1,836 bp | + | 42.8% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 46.6% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,590 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,590 | 15,659 | 70 bp | − | – |
| D-loop | Control region | 15,660 | 16,696 | 1,037 bp | – | 35.7% |