MitoAge

Macaca arctoides

Stump-tailed macaque

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Maximum lifespan
29.2 yr
AnAge record
mtDNA size
16,558 bp
RefSeq NC_025201.1
GC content
43.17%
Whole genome
Non-coding
1,212 bp
D-loop 1,081 bp

Where Stump-tailed macaque sits among 2,335 species

Whole-genome GC content against maximum lifespan. Stump-tailed macaque has the 481st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Stump-tailed macaque
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,558 bp
GC skew (G − C) / (G + C)
−0.409
AT skew (A − T) / (A + T)
+0.124

Life history

Maximum lifespan
29.2 years
Adult weight
9.3 kg
Birth weight
479 g
Female sexual maturity
3.2 years
Male sexual maturity
5.7 years
Gestation or incubation
177 days
Litter or clutch size
1
Litters per year
0.6

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02736)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,558 bp
Protein-coding11,370 bp
12S rRNA946 bp
16S rRNA1,558 bp
All tRNA1,500 bp
D-loop1,081 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.4%25.4%11.0%33.2%44.19%−0.502+0.088
ND2NADH dehydrogenase subunit 21,042 bp34.8%24.0%7.4%33.8%41.17%−0.641+0.184
COX1Cytochrome c oxidase subunit I1,569 bp27.5%29.4%15.6%27.6%43.15%−0.279−0.034
COX2Cytochrome c oxidase subunit II684 bp31.4%24.4%14.0%30.1%44.15%−0.364+0.126
ATP8ATP synthase F0 subunit 8202 bp38.1%22.8%6.4%32.7%39.11%−0.671+0.252
ATP6ATP synthase F0 subunit 6681 bp31.9%23.6%10.6%33.9%44.49%−0.525+0.148
COX3Cytochrome c oxidase subunit III784 bp28.4%27.7%13.1%30.7%43.88%−0.401+0.014
ND3NADH dehydrogenase subunit 3346 bp32.7%27.2%9.8%30.3%40.17%−0.511+0.092
ND4LNADH dehydrogenase subunit 4L297 bp27.6%30.3%12.1%30.0%42.09%−0.424−0.047
ND4NADH dehydrogenase subunit 41,378 bp31.4%26.1%9.8%32.7%42.45%−0.538+0.092
ND5NADH dehydrogenase subunit 51,812 bp32.2%24.7%10.4%32.8%43.16%−0.519+0.132
ND6NADH dehydrogenase subunit 6528 bp39.8%16.3%7.8%36.2%43.94%−0.647+0.419
CYTBCytochrome b1,141 bp28.9%24.7%11.9%34.4%46.36%−0.486+0.078
12S rRNA12S ribosomal RNA946 bp33.1%22.2%19.2%25.5%44.72%−0.139+0.197
16S rRNA16S ribosomal RNA1,558 bp35.9%21.2%17.3%25.7%42.94%−0.196+0.258
D-loopControl region (D-loop)1,081 bp29.4%25.7%13.2%31.6%44.87%−0.410+0.067

Codon usage

Counts per codon, darker is more frequent

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.5%
UUU76
UUC134
Leu L16.5%
UUA72
UUG18
CUU74
CUC139
CUA288
CUG35
Ile I8.5%
AUU118
AUC205
Met M5.8%
AUA186
AUG35
Val V4.2%
GUU43
GUC37
GUA63
GUG17
Ser S7.1%
UCU46
UCC78
UCA76
UCG8
AGU11
AGC50
Pro P5.8%
CCU44
CCC97
CCA75
CCG3
Thr T10.2%
ACU62
ACC142
ACA169
ACG14
Ala A6.4%
GCU49
GCC112
GCA73
GCG9
Tyr Y3.5%
UAU49
UAC83
His H2.5%
CAU25
CAC72
Gln Q2.5%
CAA90
CAG7
Asn N4.5%
AAU40
AAC131
Lys K2.5%
AAA88
AAG7
Asp D1.6%
GAU26
GAC35
Glu E2.3%
GAA68
GAG18
Cys C0.7%
UGU4
UGC23
Trp W2.7%
UGA91
UGG11
Arg R1.7%
CGU7
CGC26
CGA30
CGG2
Gly G5.4%
GGU33
GGC83
GGA66
GGG25
Stop 0.2%
UAA5
UAG0
AGA0
AGG1

Genome map

38 annotated features in NC_025201.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17272 bp+–
12S rRNARibosomal RNA731,018946 bp+44.7%
tRNA-ValTransfer RNA1,0241,09269 bp+–
16S rRNARibosomal RNA1,0932,6501,558 bp+42.9%
tRNA-Leu (UUR)Transfer RNA2,6572,73175 bp+–
ND1Protein-coding gene2,7343,688955 bp+44.2%
tRNA-IleTransfer RNA3,6893,75769 bp+–
tRNA-GlnTransfer RNA3,7553,82571 bp−–
tRNA-MetTransfer RNA3,8263,89368 bp+–
ND2Protein-coding gene3,8944,9351,042 bp+41.2%
tRNA-TrpTransfer RNA4,9365,00267 bp+–
tRNA-AlaTransfer RNA5,0105,07869 bp−–
tRNA-AsnTransfer RNA5,0805,15273 bp+–
tRNA-CysTransfer RNA5,1855,25369 bp−–
tRNA-TyrTransfer RNA5,2535,31866 bp−–
COX1Protein-coding gene5,3236,8911,569 bp+43.2%
tRNA-Ser (UCN)Transfer RNA6,8646,93269 bp−–
tRNA-AspTransfer RNA6,9367,00368 bp+–
COX2Protein-coding gene7,0057,688684 bp+44.2%
tRNA-LysTransfer RNA7,7537,81866 bp+–
ATP8Protein-coding gene7,8208,021202 bp+39.1%
ATP6Protein-coding gene7,9818,661681 bp+44.5%
COX3Protein-coding gene8,6619,444784 bp+43.9%
tRNA-GlyTransfer RNA9,4459,51268 bp+–
ND3Protein-coding gene9,5139,858346 bp+40.2%
tRNA-ArgTransfer RNA9,8599,92365 bp+–
ND4LProtein-coding gene9,92410,220297 bp+42.1%
ND4Protein-coding gene10,21411,5911,378 bp+42.5%
tRNA-HisTransfer RNA11,59211,66069 bp+–
tRNA-Ser (AGY)Transfer RNA11,66111,71959 bp+–
tRNA-Leu (CUN)Transfer RNA11,72011,79071 bp+–
ND5Protein-coding gene11,79113,6021,812 bp+43.2%
ND6Protein-coding gene13,60314,130528 bp−43.9%
tRNA-GluTransfer RNA14,13114,19969 bp−–
CYTBProtein-coding gene14,20415,3441,141 bp+46.4%
tRNA-ThrTransfer RNA15,34515,40864 bp+–
tRNA-ProTransfer RNA15,41015,47768 bp−–
D-loopControl region15,47816,5581,081 bp–44.9%

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