Macaca fuscata
Japanese macaque
GC content
43.44%
Whole genome
Non-coding
1,221 bp
D-loop 1,088 bp
Where Japanese macaque sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese macaque has the 280th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,565 bp
- GC skew (G − C) / (G + C)
- −0.406
- AT skew (A − T) / (A + T)
- +0.121
Life history
- Maximum lifespan
- 38.5 years
- Adult weight
- 8.9 kg
- Birth weight
- 496 g
- Female sexual maturity
- 4.1 years
- Male sexual maturity
- 3.7 years
- Gestation or incubation
- 174 days
- Litter or clutch size
- 1.5
- Litters per year
- 0.5
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02739)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- high, large sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,565 bp
Protein-coding11,370 bp
12S rRNA946 bp
16S rRNA1,557 bp
All tRNA1,499 bp
D-loop1,088 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 955 bp | 45.97% | −0.508 | +0.109 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 41.94% | −0.611 | +0.164 | |||||
| COX1Cytochrome c oxidase subunit I | 1,569 bp | 44.81% | −0.266 | −0.042 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 44.01% | −0.322 | +0.091 | |||||
| ATP8ATP synthase F0 subunit 8 | 207 bp | 41.06% | −0.624 | +0.213 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 43.17% | −0.524 | +0.127 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.90% | −0.415 | +0.023 | |||||
| ND3NADH dehydrogenase subunit 3 | 346 bp | 41.91% | −0.476 | +0.085 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.09% | −0.456 | −0.023 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 42.45% | −0.552 | +0.095 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,812 bp | 43.43% | −0.527 | +0.132 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 41.10% | −0.650 | +0.396 | |||||
| CYTBCytochrome b | 1,141 bp | 45.40% | −0.486 | +0.079 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 44.82% | −0.113 | +0.176 | |||||
| 16S rRNA16S ribosomal RNA | 1,557 bp | 42.58% | −0.179 | +0.246 | |||||
| D-loopControl region (D-loop) | 1,088 bp | 44.67% | −0.420 | +0.063 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.6%
UUU67
UUC148
Leu L16.6%
UUA76
UUG13
CUU82
CUC140
CUA287
CUG35
Ile I8.7%
AUU131
AUC199
Met M5.9%
AUA179
AUG46
Val V4.1%
GUU43
GUC29
GUA60
GUG23
Ser S6.8%
UCU47
UCC74
UCA73
UCG9
AGU12
AGC44
Pro P5.7%
CCU28
CCC116
CCA67
CCG6
Thr T10.1%
ACU55
ACC151
ACA165
ACG13
Ala A6.4%
GCU46
GCC113
GCA78
GCG5
Tyr Y3.3%
UAU44
UAC82
His H2.7%
CAU27
CAC74
Gln Q2.5%
CAA92
CAG5
Asn N4.4%
AAU32
AAC136
Lys K2.5%
AAA86
AAG8
Asp D1.8%
GAU23
GAC44
Glu E2.2%
GAA69
GAG14
Cys C0.8%
UGU8
UGC21
Trp W2.7%
UGA85
UGG17
Arg R1.7%
CGU9
CGC24
CGA29
CGG4
Gly G5.4%
GGU36
GGC79
GGA60
GGG31
Stop 0.2%
UAA6
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_025513.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 538 | 609 | 72 bp | + | – |
| 12S rRNA | Ribosomal RNA | 610 | 1,555 | 946 bp | + | 44.8% |
| tRNA-Val | Transfer RNA | 1,557 | 1,625 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,626 | 3,182 | 1,557 bp | + | 42.6% |
| tRNA-Leu (UUR) | Transfer RNA | 3,185 | 3,259 | 75 bp | + | – |
| ND1 | Protein-coding gene | 3,262 | 4,216 | 955 bp | + | 46.0% |
| tRNA-Ile | Transfer RNA | 4,217 | 4,285 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,283 | 4,354 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 4,356 | 4,423 | 68 bp | + | – |
| ND2 | Protein-coding gene | 4,424 | 5,465 | 1,042 bp | + | 41.9% |
| tRNA-Trp | Transfer RNA | 5,466 | 5,532 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,540 | 5,608 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,610 | 5,682 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,715 | 5,783 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,783 | 5,847 | 65 bp | − | – |
| COX1 | Protein-coding gene | 5,852 | 7,420 | 1,569 bp | + | 44.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,393 | 7,461 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,465 | 7,532 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,534 | 8,217 | 684 bp | + | 44.0% |
| tRNA-Lys | Transfer RNA | 8,291 | 8,355 | 65 bp | + | – |
| ATP8 | Protein-coding gene | 8,357 | 8,563 | 207 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,518 | 9,198 | 681 bp | + | 43.2% |
| COX3 | Protein-coding gene | 9,198 | 9,981 | 784 bp | + | 44.9% |
| tRNA-Gly | Transfer RNA | 9,982 | 10,049 | 68 bp | + | – |
| ND3 | Protein-coding gene | 10,050 | 10,395 | 346 bp | + | 41.9% |
| tRNA-Arg | Transfer RNA | 10,396 | 10,460 | 65 bp | + | – |
| ND4L | Protein-coding gene | 10,461 | 10,757 | 297 bp | + | 42.1% |
| ND4 | Protein-coding gene | 10,751 | 12,128 | 1,378 bp | + | 42.5% |
| tRNA-His | Transfer RNA | 12,129 | 12,197 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,198 | 12,256 | 59 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,257 | 12,327 | 71 bp | + | – |
| ND5 | Protein-coding gene | 12,328 | 14,139 | 1,812 bp | + | 43.4% |
| ND6 | Protein-coding gene | 14,140 | 14,667 | 528 bp | − | 41.1% |
| tRNA-Glu | Transfer RNA | 14,668 | 14,736 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,741 | 15,881 | 1,141 bp | + | 45.4% |
| tRNA-Thr | Transfer RNA | 15,882 | 15,945 | 64 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,947 | 16,014 | 68 bp | − | – |
| D-loop | Control region | 16,015 | 537 | 1,088 bp | – | 44.7% |