Macaca tonkeana

Tonkean macaque

Maximum lifespan

28.4 yr

AnAge record

mtDNA size

16,560 bp

RefSeq NC_025222.1

GC content

43.44%

Whole genome

Non-coding

1,216 bp

D-loop 1,088 bp

Where Tonkean macaque sits among 2,335 species

Whole-genome GC content against maximum lifespan. Tonkean macaque has the 508th longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,560 bp

GC skew (G − C) / (G + C): −0.404
AT skew (A − T) / (A + T): +0.124

Life history

Maximum lifespan: 28.4 years
Adult weight: 12 kg
Gestation or incubation: 173 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02750)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,560 bp

Protein-coding11,367 bp

12S rRNA945 bp

16S rRNA1,558 bp

All tRNA1,502 bp

D-loop1,088 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Macaca tonkeana genes

ND1NADH dehydrogenase subunit 1	955 bp	30.3%	23.8%	11.4%	34.6%	45.97%	−0.503	+0.120
ND2NADH dehydrogenase subunit 2	1,042 bp	34.1%	23.1%	8.3%	34.5%	42.80%	−0.614	+0.191
COX1Cytochrome c oxidase subunit I	1,569 bp	26.3%	28.4%	17.1%	28.2%	45.38%	−0.244	−0.039
COX2Cytochrome c oxidase subunit II	684 bp	32.0%	25.9%	13.7%	28.4%	42.11%	−0.347	+0.106
ATP8ATP synthase F0 subunit 8	207 bp	37.2%	23.7%	9.2%	30.0%	39.13%	−0.531	+0.222
ATP6ATP synthase F0 subunit 6	681 bp	31.7%	24.8%	10.6%	32.9%	43.47%	−0.514	+0.122
COX3Cytochrome c oxidase subunit III	784 bp	28.2%	26.8%	13.3%	31.8%	45.03%	−0.411	+0.026
ND3NADH dehydrogenase subunit 3	346 bp	32.7%	27.7%	10.1%	29.5%	39.60%	−0.489	+0.081
ND4LNADH dehydrogenase subunit 4L	297 bp	28.6%	30.3%	11.4%	29.6%	41.08%	−0.443	−0.029
ND4NADH dehydrogenase subunit 4	1,378 bp	31.8%	26.0%	9.5%	32.7%	42.24%	−0.550	+0.101
ND5NADH dehydrogenase subunit 5	1,809 bp	31.7%	24.7%	10.6%	33.0%	43.56%	−0.515	+0.124
ND6NADH dehydrogenase subunit 6	528 bp	40.2%	17.2%	7.8%	34.8%	42.61%	−0.636	+0.399
CYTBCytochrome b	1,141 bp	29.0%	25.4%	11.7%	33.8%	45.57%	−0.485	+0.066
12S rRNA12S ribosomal RNA	945 bp	33.1%	21.6%	19.5%	25.8%	45.29%	−0.140	+0.211
16S rRNA16S ribosomal RNA	1,558 bp	35.7%	21.6%	17.5%	25.2%	42.68%	−0.182	+0.245
D-loopControl region (D-loop)	1,088 bp	29.4%	26.5%	12.7%	31.4%	44.12%	−0.425	+0.053

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.6%

UUU69

UUC143

Leu L16.6%

UUA68

UUG18

CUU74

CUC143

CUA297

CUG32

Ile I8.4%

AUU127

AUC192

Met M6.0%

AUA185

AUG45

Val V4.2%

GUU30

GUC50

GUA53

GUG25

Ser S6.9%

UCU37

UCC81

UCA76

UCG7

AGU11

AGC52

Pro P5.6%

CCU34

CCC100

CCA68

CCG12

Thr T10.2%

ACU63

ACC146

ACA167

ACG14

Ala A6.3%

GCU42

GCC116

GCA69

GCG11

Tyr Y3.4%

UAU47

UAC84

His H2.6%

CAU23

CAC75

Gln Q2.5%

CAA87

CAG10

Asn N4.5%

AAU49

AAC122

Lys K2.4%

AAA84

AAG6

Asp D1.7%

GAU29

GAC34

Glu E2.2%

GAA70

GAG15

Cys C0.7%

UGU5

UGC23

Trp W2.7%

UGA88

UGG15

Arg R1.8%

CGU6

CGC27

CGA33

CGG1

Gly G5.5%

GGU41

GGC74

GGA64

GGG29

Stop 0.2%

UAA6

UAG0

AGA1

AGG0

Genome map

38 annotated features in NC_025222.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Macaca tonkeana (NC_025222.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	72	72 bp	+	–
12S rRNA	Ribosomal RNA	73	1,017	945 bp	+	45.3%
tRNA-Val	Transfer RNA	1,022	1,090	69 bp	+	–
16S rRNA	Ribosomal RNA	1,091	2,648	1,558 bp	+	42.7%
tRNA-Leu (UUR)	Transfer RNA	2,653	2,727	75 bp	+	–
ND1	Protein-coding gene	2,730	3,684	955 bp	+	46.0%
tRNA-Ile	Transfer RNA	3,685	3,753	69 bp	+	–
tRNA-Gln	Transfer RNA	3,751	3,822	72 bp	−	–
tRNA-Met	Transfer RNA	3,824	3,892	69 bp	+	–
ND2	Protein-coding gene	3,893	4,934	1,042 bp	+	42.8%
tRNA-Trp	Transfer RNA	4,935	5,001	67 bp	+	–
tRNA-Ala	Transfer RNA	5,009	5,077	69 bp	−	–
tRNA-Asn	Transfer RNA	5,079	5,151	73 bp	−	–
tRNA-Cys	Transfer RNA	5,184	5,252	69 bp	−	–
tRNA-Tyr	Transfer RNA	5,252	5,317	66 bp	−	–
COX1	Protein-coding gene	5,322	6,890	1,569 bp	+	45.4%
tRNA-Ser (UCN)	Transfer RNA	6,863	6,931	69 bp	−	–
tRNA-Asp	Transfer RNA	6,935	7,002	68 bp	+	–
COX2	Protein-coding gene	7,004	7,687	684 bp	+	42.1%
tRNA-Lys	Transfer RNA	7,748	7,812	65 bp	+	–
ATP8	Protein-coding gene	7,814	8,020	207 bp	+	39.1%
ATP6	Protein-coding gene	7,975	8,655	681 bp	+	43.5%
COX3	Protein-coding gene	8,655	9,438	784 bp	+	45.0%
tRNA-Gly	Transfer RNA	9,439	9,506	68 bp	+	–
ND3	Protein-coding gene	9,507	9,852	346 bp	+	39.6%
tRNA-Arg	Transfer RNA	9,853	9,917	65 bp	+	–
ND4L	Protein-coding gene	9,918	10,214	297 bp	+	41.1%
ND4	Protein-coding gene	10,208	11,585	1,378 bp	+	42.2%
tRNA-His	Transfer RNA	11,586	11,654	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,655	11,713	59 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,714	11,784	71 bp	+	–
ND5	Protein-coding gene	11,788	13,596	1,809 bp	+	43.6%
ND6	Protein-coding gene	13,597	14,124	528 bp	−	42.6%
tRNA-Glu	Transfer RNA	14,125	14,193	69 bp	−	–
CYTB	Protein-coding gene	14,198	15,338	1,141 bp	+	45.6%
tRNA-Thr	Transfer RNA	15,339	15,403	65 bp	+	–
tRNA-Pro	Transfer RNA	15,405	15,472	68 bp	−	–
D-loop	Control region	15,473	16,560	1,088 bp	–	44.1%