Macrhybopsis storeriana
Silver chub
GC content
41.74%
Whole genome
Non-coding
1,111 bp
D-loop 969 bp
Where Silver chub sits among 2,335 species
Whole-genome GC content against maximum lifespan. Silver chub has the 2,106th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,709 bp
- GC skew (G − C) / (G + C)
- −0.222
- AT skew (A − T) / (A + T)
- +0.040
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,709 bp
Protein-coding11,403 bp
12S rRNA957 bp
16S rRNA1,679 bp
All tRNA1,560 bp
D-loop969 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.36% | −0.278 | −0.039 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.45% | −0.374 | +0.046 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 41.52% | −0.161 | −0.087 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.93% | −0.212 | +0.038 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 36.36% | −0.500 | +0.124 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.72% | −0.326 | −0.033 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.88% | −0.209 | −0.050 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 40.97% | −0.245 | −0.087 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.76% | −0.291 | −0.024 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 40.81% | −0.305 | −0.010 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 39.54% | −0.336 | +0.025 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 42.72% | −0.399 | +0.331 | |||||
| CYTBCytochrome b | 1,141 bp | 40.75% | −0.290 | −0.050 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 49.53% | −0.076 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 43.66% | −0.042 | +0.230 | |||||
| D-loopControl region (D-loop) | 969 bp | 34.88% | −0.183 | +0.008 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU121
UUC111
Leu L16.3%
UUA181
UUG16
CUU141
CUC84
CUA175
CUG23
Ile I7.1%
AUU208
AUC63
Met M4.7%
AUA135
AUG44
Val V6.3%
GUU64
GUC44
GUA115
GUG18
Ser S6.3%
UCU40
UCC61
UCA81
UCG5
AGU14
AGC38
Pro P5.7%
CCU57
CCC49
CCA98
CCG11
Thr T7.7%
ACU63
ACC87
ACA138
ACG6
Ala A9.3%
GCU72
GCC133
GCA137
GCG11
Tyr Y3.0%
UAU64
UAC51
His H2.7%
CAU42
CAC62
Gln Q2.6%
CAA90
CAG8
Asn N3.1%
AAU59
AAC58
Lys K2.1%
AAA70
AAG10
Asp D2.0%
GAU30
GAC46
Glu E2.6%
GAA79
GAG20
Cys C0.7%
UGU16
UGC10
Trp W3.2%
UGA107
UGG13
Arg R2.0%
CGU7
CGC16
CGA46
CGG8
Gly G6.4%
GGU43
GGC49
GGA111
GGG39
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_030485.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA1
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
Not drawn: 12S rRNA 1–16,709, annotated over most of the record.
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Val | Transfer RNA | 9 | 80 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 81 | 1,759 | 1,679 bp | + | 43.7% |
| tRNA-Leu (UUR) | Transfer RNA | 1,760 | 1,835 | 76 bp | + | – |
| ND1 | Protein-coding gene | 1,837 | 2,811 | 975 bp | + | 42.4% |
| tRNA-Ile | Transfer RNA | 2,816 | 2,887 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 2,886 | 2,956 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 2,958 | 3,026 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,027 | 4,071 | 1,045 bp | + | 43.5% |
| tRNA-Trp | Transfer RNA | 4,072 | 4,141 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,144 | 4,212 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 4,214 | 4,286 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 4,317 | 4,382 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 4,383 | 4,453 | 71 bp | − | – |
| COX1 | Protein-coding gene | 4,455 | 6,005 | 1,551 bp | + | 41.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,006 | 6,076 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,080 | 6,153 | 74 bp | + | – |
| COX2 | Protein-coding gene | 6,160 | 6,850 | 691 bp | + | 38.9% |
| tRNA-Lys | Transfer RNA | 6,851 | 6,926 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 6,928 | 7,092 | 165 bp | + | 36.4% |
| ATP6 | Protein-coding gene | 7,086 | 7,769 | 684 bp | + | 37.7% |
| COX3 | Protein-coding gene | 7,769 | 8,552 | 784 bp | + | 43.9% |
| tRNA-Gly | Transfer RNA | 8,553 | 8,624 | 72 bp | + | – |
| ND3 | Protein-coding gene | 8,625 | 8,973 | 349 bp | + | 41.0% |
| tRNA-Arg | Transfer RNA | 8,974 | 9,042 | 69 bp | + | – |
| ND4L | Protein-coding gene | 9,043 | 9,339 | 297 bp | + | 42.8% |
| ND4 | Protein-coding gene | 9,333 | 10,714 | 1,382 bp | + | 40.8% |
| tRNA-His | Transfer RNA | 10,715 | 10,783 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 10,784 | 10,852 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 10,854 | 10,926 | 73 bp | + | – |
| ND5 | Protein-coding gene | 10,927 | 12,762 | 1,836 bp | + | 39.5% |
| ND6 | Protein-coding gene | 12,759 | 13,280 | 522 bp | − | 42.7% |
| tRNA-Glu | Transfer RNA | 13,281 | 13,349 | 69 bp | − | – |
| CYTB | Protein-coding gene | 13,354 | 14,494 | 1,141 bp | + | 40.8% |
| tRNA-Thr | Transfer RNA | 14,495 | 14,566 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,566 | 14,635 | 70 bp | − | – |
| D-loop | Control region | 14,636 | 15,604 | 969 bp | – | 34.9% |
| tRNA-Phe | Transfer RNA | 15,692 | 15,761 | 70 bp | + | – |