Macropodus opercularis
Paradisefish
GC content
39.46%
Whole genome
Non-coding
907 bp
D-loop 830 bp
Where Paradisefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Paradisefish has the 1,751st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,496 bp
- GC skew (G − C) / (G + C)
- −0.249
- AT skew (A − T) / (A + T)
- +0.022
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,496 bp
Protein-coding11,415 bp
12S rRNA948 bp
16S rRNA1,673 bp
All tRNA1,553 bp
D-loop830 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 37.85% | −0.306 | −0.073 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 39.58% | −0.420 | +0.044 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 39.34% | −0.146 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 37.63% | −0.215 | −0.026 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.29% | −0.515 | +0.039 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.04% | −0.393 | −0.070 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.19% | −0.239 | −0.090 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 37.82% | −0.303 | −0.161 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 41.41% | −0.366 | −0.080 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 38.09% | −0.319 | −0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 37.64% | −0.349 | −0.031 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.46% | −0.505 | +0.468 | |||||
| CYTBCytochrome b | 1,154 bp | 38.56% | −0.317 | −0.083 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 43.78% | −0.055 | +0.212 | |||||
| 16S rRNA16S ribosomal RNA | 1,673 bp | 41.72% | −0.072 | +0.229 | |||||
| D-loopControl region (D-loop) | 830 bp | 33.13% | −0.229 | +0.023 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.8%
UUU153
UUC105
Leu L16.9%
UUA247
UUG25
CUU132
CUC91
CUA131
CUG19
Ile I8.2%
AUU233
AUC81
Met M4.4%
AUA131
AUG38
Val V5.1%
GUU74
GUC27
GUA80
GUG15
Ser S6.7%
UCU63
UCC54
UCA79
UCG7
AGU29
AGC23
Pro P5.8%
CCU54
CCC67
CCA87
CCG12
Thr T7.9%
ACU81
ACC78
ACA130
ACG12
Ala A8.0%
GCU94
GCC101
GCA103
GCG5
Tyr Y2.9%
UAU61
UAC49
His H2.7%
CAU42
CAC61
Gln Q2.4%
CAA83
CAG8
Asn N3.4%
AAU57
AAC73
Lys K2.2%
AAA78
AAG5
Asp D1.9%
GAU38
GAC36
Glu E2.6%
GAA80
GAG20
Cys C0.6%
UGU10
UGC14
Trp W3.0%
UGA98
UGG16
Arg R2.0%
CGU12
CGC6
CGA53
CGG5
Gly G6.2%
GGU59
GGC59
GGA84
GGG34
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_025932.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 43.8% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,761 | 1,673 bp | + | 41.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,762 | 2,835 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,836 | 3,810 | 975 bp | + | 37.9% |
| tRNA-Ile | Transfer RNA | 3,820 | 3,889 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,899 | 3,969 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,969 | 4,037 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,038 | 5,083 | 1,046 bp | + | 39.6% |
| tRNA-Trp | Transfer RNA | 5,084 | 5,154 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,331 | 5,397 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,398 | 5,467 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,020 | 1,548 bp | + | 39.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,023 | 7,093 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,097 | 7,167 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,174 | 7,864 | 691 bp | + | 37.6% |
| tRNA-Lys | Transfer RNA | 7,865 | 7,938 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,940 | 8,107 | 168 bp | + | 39.3% |
| ATP6 | Protein-coding gene | 8,098 | 8,781 | 684 bp | + | 39.0% |
| COX3 | Protein-coding gene | 8,782 | 9,566 | 785 bp | + | 43.2% |
| tRNA-Gly | Transfer RNA | 9,567 | 9,637 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,638 | 9,986 | 349 bp | + | 37.8% |
| tRNA-Arg | Transfer RNA | 9,987 | 10,056 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,058 | 10,354 | 297 bp | + | 41.4% |
| ND4 | Protein-coding gene | 10,348 | 11,728 | 1,381 bp | + | 38.1% |
| tRNA-His | Transfer RNA | 11,729 | 11,797 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,866 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,869 | 11,941 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,942 | 13,777 | 1,836 bp | + | 37.6% |
| ND6 | Protein-coding gene | 13,774 | 14,295 | 522 bp | − | 39.5% |
| tRNA-Glu | Transfer RNA | 14,296 | 14,364 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,368 | 15,521 | 1,154 bp | + | 38.6% |
| tRNA-Thr | Transfer RNA | 15,522 | 15,594 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,597 | 15,666 | 70 bp | − | – |
| D-loop | Control region | 15,667 | 16,496 | 830 bp | – | 33.1% |