Macroramphosus scolopax
Longspine snipefish
GC content
47.58%
Whole genome
Non-coding
422 bp
D-loop 360 bp
Where Longspine snipefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Longspine snipefish has the 1,930th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,016 bp
- GC skew (G − C) / (G + C)
- −0.274
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,016 bp
Protein-coding11,404 bp
12S rRNA945 bp
16S rRNA1,688 bp
All tRNA1,557 bp
D-loop360 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.56% | −0.335 | −0.100 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,043 bp | 49.19% | −0.462 | +0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.58% | −0.206 | −0.102 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.244 | −0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.526 | +0.109 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 47.88% | −0.474 | −0.062 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.81% | −0.315 | −0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 52.44% | −0.377 | −0.181 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.284 | −0.195 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.46% | −0.359 | −0.034 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.29% | −0.387 | −0.022 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.62% | −0.351 | +0.437 | |||||
| CYTBCytochrome b | 1,141 bp | 47.42% | −0.360 | −0.147 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 49.21% | −0.088 | +0.158 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 44.96% | −0.080 | +0.234 | |||||
| D-loopControl region (D-loop) | 360 bp | 33.06% | +0.059 | +0.120 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU81
UUC151
Leu L17.4%
UUA64
UUG15
CUU164
CUC190
CUA168
CUG62
Ile I7.1%
AUU134
AUC137
Met M4.1%
AUA67
AUG90
Val V5.8%
GUU59
GUC77
GUA60
GUG25
Ser S6.9%
UCU49
UCC93
UCA51
UCG11
AGU15
AGC43
Pro P5.9%
CCU39
CCC111
CCA62
CCG12
Thr T7.4%
ACU55
ACC117
ACA95
ACG15
Ala A9.1%
GCU76
GCC168
GCA84
GCG18
Tyr Y2.8%
UAU29
UAC79
His H2.9%
CAU29
CAC80
Gln Q2.4%
CAA72
CAG21
Asn N3.0%
AAU42
AAC72
Lys K1.9%
AAA65
AAG7
Asp D2.0%
GAU21
GAC57
Glu E2.6%
GAA69
GAG31
Cys C0.6%
UGU5
UGC19
Trp W3.1%
UGA100
UGG19
Arg R2.0%
CGU11
CGC18
CGA40
CGG8
Gly G6.5%
GGU42
GGC97
GGA61
GGG47
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_010265.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,016 | 945 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,776 | 1,688 bp | + | 45.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,777 | 2,850 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,851 | 3,825 | 975 bp | + | 50.6% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,898 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,898 | 3,968 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,968 | 4,037 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,038 | 5,080 | 1,043 bp | + | 49.2% |
| tRNA-Trp | Transfer RNA | 5,081 | 5,152 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,154 | 5,222 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,224 | 5,296 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,334 | 5,401 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,401 | 5,471 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,023 | 1,551 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,169 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,941 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,943 | 8,110 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,101 | 8,783 | 683 bp | + | 47.9% |
| COX3 | Protein-coding gene | 8,784 | 9,568 | 785 bp | + | 49.8% |
| tRNA-Gly | Transfer RNA | 9,569 | 9,640 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,641 | 9,989 | 349 bp | + | 52.4% |
| tRNA-Arg | Transfer RNA | 9,990 | 10,058 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,059 | 10,355 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,349 | 11,729 | 1,381 bp | + | 49.5% |
| tRNA-His | Transfer RNA | 11,730 | 11,798 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,799 | 11,866 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,870 | 11,942 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,943 | 13,781 | 1,839 bp | + | 48.3% |
| ND6 | Protein-coding gene | 13,778 | 14,299 | 522 bp | − | 49.6% |
| tRNA-Glu | Transfer RNA | 14,300 | 14,368 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,374 | 15,514 | 1,141 bp | + | 47.4% |
| tRNA-Thr | Transfer RNA | 15,515 | 15,586 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,587 | 15,656 | 70 bp | − | – |
| D-loop | Control region | 15,657 | 16,016 | 360 bp | – | 33.1% |