Macrostomum lignano
Macrostomum lignano
GC content
27.81%
Whole genome
Non-coding
865 bp
Including the D-loop
Where Macrostomum lignano sits among 2,335 species
Whole-genome GC content against maximum lifespan. Macrostomum lignano has the 2,319th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome14,193 bp
- GC skew (G − C) / (G + C)
- +0.370
- AT skew (A − T) / (A + T)
- −0.273
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome14,193 bp
Protein-coding10,554 bp
12S rRNA739 bp
16S rRNA867 bp
All tRNA1,241 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 873 bp | 30.13% | +0.498 | −0.364 | |||||
| ND2NADH dehydrogenase subunit 2 | 891 bp | 21.66% | +0.358 | −0.367 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 34.76% | +0.320 | −0.329 | |||||
| COX2Cytochrome c oxidase subunit II | 675 bp | 29.93% | +0.485 | −0.256 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 24.41% | +0.317 | −0.449 | |||||
| ATP6ATP synthase F0 subunit 6 | 678 bp | 27.73% | +0.436 | −0.420 | |||||
| COX3Cytochrome c oxidase subunit III | 789 bp | 32.19% | +0.425 | −0.417 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 31.62% | +0.622 | −0.400 | |||||
| ND4LNADH dehydrogenase subunit 4L | 258 bp | 23.64% | +0.508 | −0.381 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,227 bp | 27.95% | +0.399 | −0.385 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,557 bp | 28.45% | +0.440 | −0.347 | |||||
| ND6NADH dehydrogenase subunit 6 | 438 bp | 25.11% | +0.564 | −0.402 | |||||
| CYTBCytochrome b | 1,101 bp | 29.88% | +0.277 | −0.383 | |||||
| 12S rRNA12S ribosomal RNA | 739 bp | 18.95% | +0.243 | −0.045 | |||||
| 16S rRNA16S ribosomal RNA | 867 bp | 20.19% | +0.291 | −0.046 |
Codon usage
Counts per codon, darker is more frequent3,518 codons in all protein-coding genes. Grouped with the Echinoderm and flatworm mitochondrial code (NCBI table 9).
Phe F16.7%
UUU533
UUC56
Leu L13.6%
UUA297
UUG182
CUU0
CUC0
CUA0
CUG0
Ile I8.0%
AUU179
AUC16
AUA86
Met M2.0%
AUG70
Val V9.8%
GUU233
GUC9
GUA50
GUG53
Ser S10.5%
UCU129
UCC13
UCA24
UCG11
AGU77
AGC12
AGA53
AGG52
Pro P2.6%
CCU53
CCC19
CCA16
CCG3
Thr T2.5%
ACU58
ACC9
ACA15
ACG7
Ala A2.9%
GCU66
GCC13
GCA16
GCG7
Tyr Y4.3%
UAU132
UAC20
His H1.6%
CAU49
CAC6
Gln Q1.3%
CAA30
CAG16
Asn N5.6%
AAU81
AAC15
AAA102
Lys K1.3%
AAG46
Asp D1.7%
GAU50
GAC9
Glu E2.2%
GAA38
GAG40
Cys C1.1%
UGU35
UGC2
Trp W2.7%
UGA45
UGG51
Arg R1.3%
CGU22
CGC5
CGA10
CGG10
Gly G7.8%
GGU107
GGC7
GGA53
GGG108
Stop 0.3%
UAA9
UAG3
Genome map
36 annotated features in NC_035255.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA21
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (27.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 36 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,548 | 1,548 bp | + | 34.8% |
| CYTB | Protein-coding gene | 1,560 | 2,660 | 1,101 bp | + | 29.9% |
| tRNA-His | Transfer RNA | 2,661 | 2,720 | 60 bp | + | – |
| tRNA-Gln | Transfer RNA | 2,721 | 2,775 | 55 bp | + | – |
| tRNA-Trp | Transfer RNA | 2,776 | 2,837 | 62 bp | + | – |
| tRNA-Thr | Transfer RNA | 2,838 | 2,896 | 59 bp | + | – |
| tRNA-Pro | Transfer RNA | 2,897 | 2,959 | 63 bp | + | – |
| 16S rRNA | Ribosomal RNA | 2,969 | 3,835 | 867 bp | + | 20.2% |
| tRNA-Val | Transfer RNA | 3,846 | 3,905 | 60 bp | + | – |
| tRNA-Glu | Transfer RNA | 3,906 | 3,965 | 60 bp | + | – |
| tRNA-Ser | Transfer RNA | 3,963 | 4,015 | 53 bp | + | – |
| ND1 | Protein-coding gene | 4,015 | 4,887 | 873 bp | + | 30.1% |
| ATP6 | Protein-coding gene | 4,913 | 5,590 | 678 bp | + | 27.7% |
| ND3 | Protein-coding gene | 5,601 | 5,951 | 351 bp | + | 31.6% |
| COX3 | Protein-coding gene | 5,986 | 6,774 | 789 bp | + | 32.2% |
| ND6 | Protein-coding gene | 6,777 | 7,214 | 438 bp | + | 25.1% |
| tRNA-Met | Transfer RNA | 7,213 | 7,272 | 60 bp | + | – |
| tRNA-Ala | Transfer RNA | 7,273 | 7,334 | 62 bp | + | – |
| tRNA-Gly | Transfer RNA | 7,335 | 7,395 | 61 bp | + | – |
| COX2 | Protein-coding gene | 7,396 | 8,070 | 675 bp | + | 29.9% |
| tRNA-Lys | Transfer RNA | 8,069 | 8,121 | 53 bp | + | – |
| tRNA-Phe | Transfer RNA | 8,122 | 8,183 | 62 bp | + | – |
| ND2 | Protein-coding gene | 8,181 | 9,071 | 891 bp | + | 21.7% |
| tRNA-Ile | Transfer RNA | 9,072 | 9,133 | 62 bp | + | – |
| ND4L | Protein-coding gene | 9,133 | 9,390 | 258 bp | + | 23.6% |
| tRNA-Ser | Transfer RNA | 9,390 | 9,443 | 54 bp | + | – |
| ND4 | Protein-coding gene | 10,166 | 11,392 | 1,227 bp | + | 28.0% |
| tRNA-Asp | Transfer RNA | 11,391 | 11,448 | 58 bp | + | – |
| tRNA-Arg | Transfer RNA | 11,449 | 11,508 | 60 bp | + | – |
| 12S rRNA | Ribosomal RNA | 11,450 | 12,188 | 739 bp | + | 19.0% |
| ND5 | Protein-coding gene | 12,205 | 13,761 | 1,557 bp | + | 28.5% |
| tRNA-Asn | Transfer RNA | 13,760 | 13,819 | 60 bp | + | – |
| tRNA-Tyr | Transfer RNA | 13,819 | 13,880 | 62 bp | + | – |
| tRNA-Leu | Transfer RNA | 13,881 | 13,940 | 60 bp | + | – |
| tRNA-Cys | Transfer RNA | 13,941 | 13,999 | 59 bp | + | – |
| ATP8 | Protein-coding gene | 14,013 | 14,180 | 168 bp | + | 24.4% |