Magallana ariakensis
Suminoe oyster
GC content
37.13%
Whole genome
Non-coding
2,014 bp
Including the D-loop
Where Suminoe oyster sits among 2,335 species
Whole-genome GC content against maximum lifespan. Suminoe oyster has the 2,056th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome18,414 bp
- GC skew (G − C) / (G + C)
- +0.202
- AT skew (A − T) / (A + T)
- −0.128
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, tiny sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,414 bp
Protein-coding11,131 bp
12S rRNA1,070 bp
16S rRNA712 bp
All tRNA1,698 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 936 bp | 37.61% | +0.233 | −0.271 | |||||
| ND2NADH dehydrogenase subunit 2 | 999 bp | 36.44% | +0.247 | −0.288 | |||||
| COX1Cytochrome c oxidase subunit I | 1,617 bp | 38.10% | +0.114 | −0.227 | |||||
| COX2Cytochrome c oxidase subunit II | 702 bp | 38.03% | +0.221 | −0.191 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 34.52% | +0.219 | −0.149 | |||||
| COX3Cytochrome c oxidase subunit III | 864 bp | 36.69% | +0.136 | −0.177 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 35.33% | +0.226 | −0.225 | |||||
| ND4LNADH dehydrogenase subunit 4L | 283 bp | 34.63% | +0.224 | −0.308 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,350 bp | 36.59% | +0.255 | −0.220 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,671 bp | 39.92% | +0.193 | −0.217 | |||||
| ND6NADH dehydrogenase subunit 6 | 480 bp | 35.83% | +0.174 | −0.214 | |||||
| CYTBCytochrome b | 1,203 bp | 38.07% | +0.118 | −0.165 | |||||
| 12S rRNA12S ribosomal RNA | 1,070 bp | 41.50% | +0.194 | +0.093 | |||||
| 16S rRNA16S ribosomal RNA | 712 bp | 38.76% | +0.152 | +0.041 |
Codon usage
Counts per codon, darker is more frequent3,710 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.4%
UUU276
UUC37
Leu L12.7%
UUA164
UUG96
CUU122
CUC10
CUA55
CUG26
Ile I6.1%
AUU196
AUC30
Met M5.1%
AUA103
AUG87
Val V9.6%
GUU160
GUC33
GUA81
GUG82
Ser S11.0%
UCU111
UCC17
UCA69
UCG20
AGU49
AGC26
AGA74
AGG43
Pro P3.8%
CCU62
CCC5
CCA48
CCG27
Thr T4.3%
ACU75
ACC19
ACA53
ACG13
Ala A6.1%
GCU79
GCC27
GCA87
GCG33
Tyr Y3.9%
UAU93
UAC53
His H2.0%
CAU51
CAC22
Gln Q1.6%
CAA39
CAG22
Asn N2.2%
AAU55
AAC25
Lys K3.3%
AAA70
AAG54
Asp D2.2%
GAU60
GAC21
Glu E2.9%
GAA52
GAG57
Cys C2.2%
UGU54
UGC29
Trp W3.1%
UGA78
UGG38
Arg R1.7%
CGU24
CGC3
CGA18
CGG17
Gly G7.3%
GGU71
GGC36
GGA73
GGG89
Stop 0.3%
UAA5
UAG6
Genome map
41 annotated features in NC_012650.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding12
- rRNA4
- tRNA25
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (37.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 41 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,617 | 1,617 bp | + | 38.1% |
| 16S rRNA | Ribosomal RNA | 1,766 | 2,477 | 712 bp | + | 38.8% |
| COX3 | Protein-coding gene | 2,583 | 3,446 | 864 bp | + | 36.7% |
| tRNA-Ile | Transfer RNA | 3,450 | 3,516 | 67 bp | + | – |
| tRNA-Thr | Transfer RNA | 3,517 | 3,584 | 68 bp | + | – |
| tRNA-Glu | Transfer RNA | 3,606 | 3,674 | 69 bp | + | – |
| CYTB | Protein-coding gene | 3,685 | 4,887 | 1,203 bp | + | 38.1% |
| tRNA-Asp | Transfer RNA | 4,990 | 5,058 | 69 bp | + | – |
| COX2 | Protein-coding gene | 5,060 | 5,761 | 702 bp | + | 38.0% |
| tRNA-Met | Transfer RNA | 5,783 | 5,848 | 66 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 5,850 | 5,919 | 70 bp | + | – |
| tRNA-Leu (UUR) | Transfer RNA | 5,935 | 6,001 | 67 bp | + | – |
| tRNA-Met | Transfer RNA | 6,072 | 6,137 | 66 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 6,144 | 6,211 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 6,390 | 6,458 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 6,459 | 7,528 | 1,070 bp | + | 41.5% |
| tRNA-Lys | Transfer RNA | 7,529 | 7,598 | 70 bp | + | – |
| tRNA-Cys | Transfer RNA | 7,621 | 7,688 | 68 bp | + | – |
| tRNA-Gln | Transfer RNA | 7,725 | 7,793 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 7,796 | 8,401 | 606 bp | + | 38.8% |
| tRNA-Asn | Transfer RNA | 8,453 | 8,518 | 66 bp | + | – |
| 12S rRNA | Ribosomal RNA | 8,519 | 9,701 | 1,183 bp | + | 41.5% |
| tRNA-Tyr | Transfer RNA | 9,702 | 9,767 | 66 bp | + | – |
| ATP6 | Protein-coding gene | 9,773 | 10,447 | 675 bp | + | 34.5% |
| tRNA-Gly | Transfer RNA | 10,633 | 10,701 | 69 bp | + | – |
| tRNA-Val | Transfer RNA | 11,418 | 11,487 | 70 bp | + | – |
| ND2 | Protein-coding gene | 11,534 | 12,532 | 999 bp | + | 36.4% |
| tRNA-Arg | Transfer RNA | 12,567 | 12,633 | 67 bp | + | – |
| tRNA-His | Transfer RNA | 12,717 | 12,781 | 65 bp | + | – |
| ND4 | Protein-coding gene | 12,784 | 14,133 | 1,350 bp | + | 36.6% |
| tRNA-Lys | Transfer RNA | 14,142 | 14,211 | 70 bp | + | – |
| ND5 | Protein-coding gene | 14,214 | 15,884 | 1,671 bp | + | 39.9% |
| ND6 | Protein-coding gene | 15,896 | 16,375 | 480 bp | + | 35.8% |
| tRNA-Gln | Transfer RNA | 16,409 | 16,478 | 70 bp | + | – |
| ND3 | Protein-coding gene | 16,484 | 16,834 | 351 bp | + | 35.3% |
| tRNA-Leu (CUN) | Transfer RNA | 16,867 | 16,932 | 66 bp | + | – |
| tRNA-Phe | Transfer RNA | 16,971 | 17,038 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 17,055 | 17,121 | 67 bp | + | – |
| ND1 | Protein-coding gene | 17,126 | 18,061 | 936 bp | + | 37.6% |
| ND4L | Protein-coding gene | 18,063 | 18,345 | 283 bp | + | 34.6% |
| tRNA-Trp | Transfer RNA | 18,346 | 18,413 | 68 bp | + | – |