Mallotus villosus

Capelin

Maximum lifespan

10 yr

AnAge record

mtDNA size

16,648 bp

RefSeq NC_015244.1

GC content

47.65%

Whole genome

Non-coding

1,007 bp

D-loop 925 bp

Where Capelin sits among 2,335 species

Whole-genome GC content against maximum lifespan. Capelin has the 1,555th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,648 bp

GC skew (G − C) / (G + C): −0.209
AT skew (A − T) / (A + T): −0.052

Life history

Maximum lifespan: 10 years
Female sexual maturity: 3 years
Male sexual maturity: 3 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04081)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,648 bp

Protein-coding11,412 bp

12S rRNA967 bp

16S rRNA1,708 bp

All tRNA1,554 bp

D-loop925 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Mallotus villosus genes

ND1NADH dehydrogenase subunit 1	975 bp	19.6%	29.4%	18.9%	32.1%	50.97%	−0.260	−0.201
ND2NADH dehydrogenase subunit 2	1,051 bp	21.2%	29.2%	17.4%	32.2%	49.57%	−0.298	−0.158
COX1Cytochrome c oxidase subunit I	1,551 bp	22.7%	30.8%	19.1%	27.5%	46.55%	−0.180	−0.151
COX2Cytochrome c oxidase subunit II	691 bp	27.2%	26.5%	17.7%	28.7%	46.31%	−0.238	+0.013
ATP8ATP synthase F0 subunit 8	168 bp	24.4%	28.6%	14.9%	32.1%	47.02%	−0.367	−0.079
ATP6ATP synthase F0 subunit 6	684 bp	23.2%	30.3%	14.2%	32.3%	46.49%	−0.390	−0.131
COX3Cytochrome c oxidase subunit III	785 bp	21.4%	28.3%	18.6%	31.7%	50.32%	−0.261	−0.138
ND3NADH dehydrogenase subunit 3	349 bp	18.1%	33.8%	18.3%	29.8%	48.14%	−0.238	−0.304
ND4LNADH dehydrogenase subunit 4L	297 bp	20.2%	29.6%	17.5%	32.7%	50.17%	−0.302	−0.189
ND4NADH dehydrogenase subunit 4	1,381 bp	22.4%	29.9%	17.5%	30.1%	47.65%	−0.264	−0.142
ND5NADH dehydrogenase subunit 5	1,839 bp	23.4%	30.2%	16.5%	29.9%	46.38%	−0.290	−0.126
ND6NADH dehydrogenase subunit 6	522 bp	33.0%	16.7%	18.4%	32.0%	50.38%	−0.270	+0.328
CYTBCytochrome b	1,141 bp	21.5%	29.9%	18.1%	30.6%	48.64%	−0.258	−0.164
12S rRNA12S ribosomal RNA	967 bp	28.0%	21.8%	24.4%	25.7%	50.16%	−0.027	+0.124
16S rRNA16S ribosomal RNA	1,708 bp	31.1%	21.6%	22.4%	24.8%	47.25%	−0.051	+0.181
D-loopControl region (D-loop)	925 bp	29.1%	31.9%	16.4%	22.6%	39.03%	−0.158	−0.046

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU113

UUC128

Leu L16.6%

UUA66

UUG38

CUU186

CUC151

CUA132

CUG61

Ile I6.9%

AUU140

AUC123

Met M3.9%

AUA51

AUG98

Val V6.6%

GUU78

GUC71

GUA71

GUG32

Ser S7.0%

UCU79

UCC84

UCA34

UCG15

AGU8

AGC46

Pro P5.5%

CCU83

CCC82

CCA37

CCG9

Thr T7.2%

ACU69

ACC110

ACA74

ACG20

Ala A9.7%

GCU100

GCC163

GCA86

GCG21

Tyr Y2.8%

UAU36

UAC72

His H2.6%

CAU32

CAC68

Gln Q2.5%

CAA61

CAG34

Asn N2.9%

AAU39

AAC72

Lys K2.0%

AAA55

AAG21

Asp D2.0%

GAU21

GAC54

Glu E2.7%

GAA68

GAG33

Cys C0.8%

UGU13

UGC16

Trp W3.2%

UGA89

UGG33

Arg R2.0%

CGU15

CGC11

CGA32

CGG18

Gly G6.6%

GGU38

GGC82

GGA57

GGG73

Stop 0.2%

UAA5

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_015244.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Mallotus villosus (NC_015244.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,035	967 bp	+	50.2%
tRNA-Val	Transfer RNA	1,036	1,106	71 bp	+	–
16S rRNA	Ribosomal RNA	1,107	2,814	1,708 bp	+	47.3%
tRNA-Leu (UUR)	Transfer RNA	2,822	2,895	74 bp	+	–
ND1	Protein-coding gene	2,896	3,870	975 bp	+	51.0%
tRNA-Ile	Transfer RNA	3,873	3,944	72 bp	+	–
tRNA-Gln	Transfer RNA	3,945	4,014	70 bp	−	–
tRNA-Met	Transfer RNA	4,014	4,082	69 bp	+	–
ND2	Protein-coding gene	4,087	5,137	1,051 bp	+	49.6%
tRNA-Trp	Transfer RNA	5,138	5,209	72 bp	+	–
tRNA-Ala	Transfer RNA	5,211	5,279	69 bp	−	–
tRNA-Asn	Transfer RNA	5,281	5,353	73 bp	−	–
tRNA-Cys	Transfer RNA	5,382	5,446	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,447	5,514	68 bp	−	–
COX1	Protein-coding gene	5,531	7,081	1,551 bp	+	46.6%
tRNA-Ser (UCN)	Transfer RNA	7,082	7,152	71 bp	−	–
tRNA-Asp	Transfer RNA	7,157	7,229	73 bp	+	–
COX2	Protein-coding gene	7,244	7,934	691 bp	+	46.3%
tRNA-Lys	Transfer RNA	7,935	8,009	75 bp	+	–
ATP8	Protein-coding gene	8,011	8,178	168 bp	+	47.0%
ATP6	Protein-coding gene	8,169	8,852	684 bp	+	46.5%
COX3	Protein-coding gene	8,852	9,636	785 bp	+	50.3%
tRNA-Gly	Transfer RNA	9,637	9,707	71 bp	+	–
ND3	Protein-coding gene	9,708	10,056	349 bp	+	48.1%
tRNA-Arg	Transfer RNA	10,057	10,126	70 bp	+	–
ND4L	Protein-coding gene	10,127	10,423	297 bp	+	50.2%
ND4	Protein-coding gene	10,417	11,797	1,381 bp	+	47.7%
tRNA-His	Transfer RNA	11,798	11,866	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,867	11,935	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,936	12,009	74 bp	+	–
ND5	Protein-coding gene	12,010	13,848	1,839 bp	+	46.4%
ND6	Protein-coding gene	13,845	14,366	522 bp	−	50.4%
tRNA-Glu	Transfer RNA	14,367	14,436	70 bp	−	–
CYTB	Protein-coding gene	14,441	15,581	1,141 bp	+	48.6%
tRNA-Thr	Transfer RNA	15,582	15,653	72 bp	+	–
tRNA-Pro	Transfer RNA	15,654	15,723	70 bp	−	–
D-loop	Control region	15,724	16,648	925 bp	–	39.0%