MitoAge

Marmota monax

Woodchuck

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Maximum lifespan
14 yr
AnAge record
mtDNA size
16,439 bp
RefSeq NC_080739.1
GC content
36.30%
Whole genome
Non-coding
1,068 bp
D-loop 316 bp

Where Woodchuck sits among 2,335 species

Whole-genome GC content against maximum lifespan. Woodchuck has the 1,290th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Woodchuck
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,439 bp
GC skew (G − C) / (G + C)
−0.297
AT skew (A − T) / (A + T)
+0.010

Life history

Maximum lifespan
14 years
Adult weight
4 kg
Birth weight
27 g
Basal metabolic rate
3.696 W
Body temperature
37 °C
Female sexual maturity
548 days
Male sexual maturity
548 days
Gestation or incubation
32 days
Litter or clutch size
4.5
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03142)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,439 bp
Protein-coding11,330 bp
12S rRNA969 bp
16S rRNA1,565 bp
All tRNA1,507 bp
D-loop316 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.1%32.2%11.2%25.5%36.72%−0.390−0.018
ND2NADH dehydrogenase subunit 21,042 bp34.2%32.2%8.9%24.7%33.59%−0.469+0.029
COX1Cytochrome c oxidase subunit I1,542 bp27.8%34.0%16.3%21.8%38.13%−0.143−0.101
COX2Cytochrome c oxidase subunit II684 bp33.0%29.4%13.0%24.6%37.57%−0.307+0.059
ATP8ATP synthase F0 subunit 8204 bp34.3%33.3%8.3%24.0%32.35%−0.485+0.014
ATP6ATP synthase F0 subunit 6681 bp30.4%34.4%10.7%24.5%35.24%−0.392−0.061
COX3Cytochrome c oxidase subunit III784 bp27.9%32.3%14.5%25.3%39.80%−0.269−0.072
ND3NADH dehydrogenase subunit 3347 bp27.7%34.9%13.0%24.5%37.46%−0.308−0.115
ND4LNADH dehydrogenase subunit 4L297 bp27.9%38.4%11.8%21.9%33.67%−0.300−0.157
ND4NADH dehydrogenase subunit 41,378 bp31.3%34.3%9.9%24.5%34.40%−0.426−0.046
ND5NADH dehydrogenase subunit 51,818 bp31.7%33.3%9.8%25.2%34.98%−0.440−0.024
ND6NADH dehydrogenase subunit 6525 bp40.2%23.6%6.9%29.3%36.19%−0.621+0.260
CYTBCytochrome b1,140 bp28.9%32.1%12.6%26.4%39.04%−0.353−0.053
12S rRNA12S ribosomal RNA969 bp35.6%25.9%17.2%21.3%38.49%−0.105+0.158
16S rRNA16S ribosomal RNA1,565 bp37.1%27.7%16.5%18.7%35.21%−0.060+0.144
D-loopControl region (D-loop)316 bp21.5%29.7%19.0%29.7%48.73%−0.221−0.160

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%
UUU169
UUC85
Leu L16.1%
UUA158
UUG20
CUU146
CUC74
CUA200
CUG14
Ile I9.5%
AUU248
AUC111
Met M6.0%
AUA193
AUG36
Val V4.8%
GUU57
GUC28
GUA83
GUG14
Ser S7.9%
UCU71
UCC51
UCA124
UCG4
AGU21
AGC29
Pro P5.1%
CCU70
CCC55
CCA62
CCG7
Thr T7.6%
ACU74
ACC75
ACA132
ACG9
Ala A6.1%
GCU71
GCC65
GCA91
GCG6
Tyr Y3.5%
UAU70
UAC61
His H2.6%
CAU47
CAC52
Gln Q2.2%
CAA79
CAG4
Asn N4.0%
AAU82
AAC69
Lys K2.4%
AAA84
AAG9
Asp D1.8%
GAU37
GAC32
Glu E2.6%
GAA79
GAG19
Cys C0.7%
UGU13
UGC15
Trp W2.7%
UGA97
UGG7
Arg R1.7%
CGU13
CGC7
CGA45
CGG1
Gly G5.6%
GGU34
GGC50
GGA104
GGG26
Stop 0.2%
UAA5
UAG1
AGA2
AGG0

Genome map

38 annotated features in NC_080739.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,038969 bp+38.5%
tRNA-ValTransfer RNA1,0391,10769 bp+–
16S rRNARibosomal RNA1,1082,6721,565 bp+35.2%
tRNA-Leu (UUR)Transfer RNA2,6732,74674 bp+–
ND1Protein-coding gene2,7503,705956 bp+36.7%
tRNA-IleTransfer RNA3,7063,77469 bp+–
tRNA-GlnTransfer RNA3,7723,84372 bp−–
tRNA-MetTransfer RNA3,8473,91569 bp+–
ND2Protein-coding gene3,9164,9571,042 bp+33.6%
tRNA-TrpTransfer RNA4,9585,02568 bp+–
tRNA-AlaTransfer RNA5,0295,09870 bp−–
tRNA-AsnTransfer RNA5,1045,17673 bp−–
tRNA-CysTransfer RNA5,2075,27367 bp−–
tRNA-TyrTransfer RNA5,2745,33966 bp−–
COX1Protein-coding gene5,3486,8891,542 bp+38.1%
tRNA-Ser (UCN)Transfer RNA6,8926,96069 bp−–
tRNA-AspTransfer RNA6,9647,03269 bp+–
COX2Protein-coding gene7,0337,716684 bp+37.6%
tRNA-LysTransfer RNA7,7207,78667 bp+–
ATP8Protein-coding gene7,7887,991204 bp+32.4%
ATP6Protein-coding gene7,9498,629681 bp+35.2%
COX3Protein-coding gene8,6299,412784 bp+39.8%
tRNA-GlyTransfer RNA9,4139,48169 bp+–
ND3Protein-coding gene9,4829,828347 bp+37.5%
tRNA-ArgTransfer RNA9,8299,89567 bp+–
ND4LProtein-coding gene9,89710,193297 bp+33.7%
ND4Protein-coding gene10,18711,5641,378 bp+34.4%
tRNA-HisTransfer RNA11,56511,63369 bp+–
tRNA-Ser (AGY)Transfer RNA11,63411,69259 bp+–
tRNA-Leu (CUN)Transfer RNA11,69311,76270 bp+–
ND5Protein-coding gene11,76313,5801,818 bp+35.0%
ND6Protein-coding gene13,56414,088525 bp−36.2%
tRNA-GluTransfer RNA14,08914,15769 bp−–
CYTBProtein-coding gene14,16215,3011,140 bp+39.0%
tRNA-ThrTransfer RNA15,30215,36867 bp+–
tRNA-ProTransfer RNA15,37415,44269 bp−–
D-loopControl region15,80716,122316 bp–48.7%

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