MitoAge

Marmota vancouverensis

Vancouver marmot

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Maximum lifespan
12.1 yr
AnAge record
mtDNA size
16,435 bp
RefSeq NC_048490.1
GC content
36.01%
Whole genome
Non-coding
1,067 bp
D-loop 999 bp

Where Vancouver marmot sits among 2,335 species

Whole-genome GC content against maximum lifespan. Vancouver marmot has the 1,404th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Vancouver marmot
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,435 bp
GC skew (G − C) / (G + C)
−0.301
AT skew (A − T) / (A + T)
+0.008

Life history

Maximum lifespan
12.1 years
Adult weight
4.8 kg
Female sexual maturity
3.2 years
Gestation or incubation
30 days
Litter or clutch size
3.3
Litters per year
0.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03143)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,435 bp
Protein-coding11,330 bp
12S rRNA971 bp
16S rRNA1,562 bp
All tRNA1,505 bp
D-loop999 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.1%32.2%11.0%25.7%36.72%−0.402−0.018
ND2NADH dehydrogenase subunit 21,042 bp34.6%31.6%8.4%25.3%33.78%−0.500+0.046
COX1Cytochrome c oxidase subunit I1,542 bp28.1%34.0%16.0%21.9%37.87%−0.158−0.096
COX2Cytochrome c oxidase subunit II684 bp32.5%31.9%13.0%22.7%35.67%−0.270+0.009
ATP8ATP synthase F0 subunit 8204 bp34.8%31.9%7.8%25.5%33.33%−0.529+0.044
ATP6ATP synthase F0 subunit 6681 bp30.2%34.5%10.6%24.7%35.24%−0.400−0.066
COX3Cytochrome c oxidase subunit III784 bp27.9%32.8%14.9%24.4%39.29%−0.240−0.080
ND3NADH dehydrogenase subunit 3347 bp28.2%37.2%11.5%23.1%34.58%−0.333−0.137
ND4LNADH dehydrogenase subunit 4L297 bp27.3%39.7%11.8%21.2%33.00%−0.286−0.186
ND4NADH dehydrogenase subunit 41,378 bp32.1%33.7%9.3%24.8%34.11%−0.455−0.024
ND5NADH dehydrogenase subunit 51,818 bp31.6%33.3%9.9%25.2%35.09%−0.436−0.027
ND6NADH dehydrogenase subunit 6525 bp40.0%25.0%7.2%27.8%35.05%−0.587+0.232
CYTBCytochrome b1,140 bp28.9%33.1%12.5%25.6%38.07%−0.346−0.068
12S rRNA12S ribosomal RNA971 bp35.2%25.3%17.4%22.0%39.44%−0.117+0.163
16S rRNA16S ribosomal RNA1,562 bp37.4%28.0%16.2%18.4%34.64%−0.065+0.144
D-loopControl region (D-loop)999 bp29.9%32.3%12.3%25.4%37.74%−0.347−0.039

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%
UUU158
UUC96
Leu L16.2%
UUA175
UUG11
CUU145
CUC72
CUA196
CUG18
Ile I9.4%
AUU246
AUC112
Met M5.8%
AUA195
AUG24
Val V4.7%
GUU56
GUC25
GUA85
GUG11
Ser S8.0%
UCU65
UCC57
UCA127
UCG7
AGU21
AGC25
Pro P5.1%
CCU72
CCC56
CCA63
CCG4
Thr T7.8%
ACU82
ACC69
ACA136
ACG9
Ala A6.1%
GCU78
GCC58
GCA94
GCG2
Tyr Y3.5%
UAU80
UAC53
His H2.6%
CAU53
CAC47
Gln Q2.2%
CAA78
CAG4
Asn N4.0%
AAU83
AAC70
Lys K2.4%
AAA82
AAG11
Asp D1.8%
GAU40
GAC27
Glu E2.6%
GAA81
GAG17
Cys C0.7%
UGU14
UGC13
Trp W2.7%
UGA96
UGG8
Arg R1.7%
CGU12
CGC9
CGA42
CGG2
Gly G5.7%
GGU42
GGC46
GGA106
GGG23
Stop 0.2%
UAA5
UAG0
AGA3
AGG0

Genome map

38 annotated features in NC_048490.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,039971 bp+39.4%
tRNA-ValTransfer RNA1,0401,10869 bp+–
16S rRNARibosomal RNA1,1092,6701,562 bp+34.6%
tRNA-Leu (UUR)Transfer RNA2,6712,74474 bp+–
ND1Protein-coding gene2,7483,703956 bp+36.7%
tRNA-IleTransfer RNA3,7043,77269 bp+–
tRNA-GlnTransfer RNA3,7703,84172 bp−–
tRNA-MetTransfer RNA3,8443,91269 bp+–
ND2Protein-coding gene3,9134,9541,042 bp+33.8%
tRNA-TrpTransfer RNA4,9555,02268 bp+–
tRNA-AlaTransfer RNA5,0265,09469 bp−–
tRNA-AsnTransfer RNA5,0995,17173 bp−–
tRNA-CysTransfer RNA5,2025,26867 bp−–
tRNA-TyrTransfer RNA5,2695,33466 bp−–
COX1Protein-coding gene5,3436,8841,542 bp+37.9%
tRNA-Ser (UCN)Transfer RNA6,8866,95469 bp−–
tRNA-AspTransfer RNA6,9587,02669 bp+–
COX2Protein-coding gene7,0277,710684 bp+35.7%
tRNA-LysTransfer RNA7,7147,78067 bp+–
ATP8Protein-coding gene7,7827,985204 bp+33.3%
ATP6Protein-coding gene7,9438,623681 bp+35.2%
COX3Protein-coding gene8,6239,406784 bp+39.3%
tRNA-GlyTransfer RNA9,4079,47569 bp+–
ND3Protein-coding gene9,4769,822347 bp+34.6%
tRNA-ArgTransfer RNA9,8239,88967 bp+–
ND4LProtein-coding gene9,89110,187297 bp+33.0%
ND4Protein-coding gene10,18111,5581,378 bp+34.1%
tRNA-HisTransfer RNA11,55911,62769 bp+–
tRNA-Ser (AGY)Transfer RNA11,62811,68659 bp+–
tRNA-Leu (CUN)Transfer RNA11,68711,75670 bp+–
ND5Protein-coding gene11,75713,5741,818 bp+35.1%
ND6Protein-coding gene13,55814,082525 bp−35.1%
tRNA-GluTransfer RNA14,08314,15169 bp−–
CYTBProtein-coding gene14,15615,2951,140 bp+38.1%
tRNA-ThrTransfer RNA15,29615,36267 bp+–
tRNA-ProTransfer RNA15,36815,43669 bp−–
D-loopControl region15,43716,435999 bp–37.7%

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