MitoAge

Martes americana

American marten

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Maximum lifespan
17.8 yr
AnAge record
mtDNA size
16,514 bp
RefSeq NC_020642.1
GC content
42.32%
Whole genome
Non-coding
1,128 bp
D-loop 1,069 bp

Where American marten sits among 2,335 species

Whole-genome GC content against maximum lifespan. American marten has the 1,062nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %American marten
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,514 bp
GC skew (G − C) / (G + C)
−0.302
AT skew (A − T) / (A + T)
+0.102

Life history

Maximum lifespan
17.8 years
Adult weight
884 g
Birth weight
30 g
Basal metabolic rate
3.579 W
Body temperature
38 °C
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
28 days
Litter or clutch size
3
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02182)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,514 bp
Protein-coding11,355 bp
12S rRNA959 bp
16S rRNA1,573 bp
All tRNA1,509 bp
D-loop1,069 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.5%26.7%12.9%30.9%43.77%−0.411+0.050
ND2NADH dehydrogenase subunit 21,042 bp35.0%24.5%10.9%29.6%40.50%−0.460+0.177
COX1Cytochrome c oxidase subunit I1,545 bp27.4%28.2%18.3%26.0%44.34%−0.174−0.014
COX2Cytochrome c oxidase subunit II684 bp29.5%26.3%16.1%28.1%44.15%−0.272+0.058
ATP8ATP synthase F0 subunit 8204 bp39.2%27.5%7.8%25.5%33.33%−0.529+0.176
ATP6ATP synthase F0 subunit 6681 bp29.7%26.9%12.2%31.3%43.47%−0.439+0.049
COX3Cytochrome c oxidase subunit III784 bp26.4%26.7%16.2%30.7%46.94%−0.310−0.005
ND3NADH dehydrogenase subunit 3348 bp29.9%26.1%14.7%29.3%43.97%−0.333+0.067
ND4LNADH dehydrogenase subunit 4L297 bp26.6%32.3%13.8%27.3%41.08%−0.328−0.097
ND4NADH dehydrogenase subunit 41,378 bp30.6%26.6%13.1%29.7%42.82%−0.386+0.069
ND5NADH dehydrogenase subunit 51,830 bp32.0%26.6%12.2%29.2%41.48%−0.410+0.092
ND6NADH dehydrogenase subunit 6534 bp41.8%19.7%10.7%27.9%38.58%−0.447+0.360
CYTBCytochrome b1,140 bp27.9%26.7%14.6%30.8%45.44%−0.355+0.023
12S rRNA12S ribosomal RNA959 bp36.6%22.2%18.4%22.8%41.19%−0.109+0.245
16S rRNA16S ribosomal RNA1,573 bp36.6%23.3%17.7%22.3%40.05%−0.114+0.222
D-loopControl region (D-loop)1,069 bp29.6%25.3%15.0%30.2%45.18%−0.337+0.079

Codon usage

Counts per codon, darker is more frequent

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU76
UUC161
Leu L15.9%
UUA83
UUG28
CUU61
CUC88
CUA269
CUG76
Ile I8.4%
AUU124
AUC196
Met M6.5%
AUA177
AUG72
Val V5.1%
GUU45
GUC39
GUA83
GUG27
Ser S7.2%
UCU34
UCC86
UCA88
UCG15
AGU14
AGC37
Pro P5.2%
CCU50
CCC72
CCA64
CCG11
Thr T8.3%
ACU52
ACC120
ACA127
ACG18
Ala A6.7%
GCU47
GCC104
GCA92
GCG12
Tyr Y3.4%
UAU38
UAC91
His H2.6%
CAU26
CAC74
Gln Q2.3%
CAA72
CAG15
Asn N4.0%
AAU46
AAC107
Lys K2.7%
AAA90
AAG13
Asp D1.8%
GAU21
GAC48
Glu E2.5%
GAA64
GAG32
Cys C0.6%
UGU9
UGC14
Trp W2.8%
UGA89
UGG16
Arg R1.7%
CGU9
CGC13
CGA37
CGG5
Gly G5.8%
GGU44
GGC54
GGA92
GGG30
Stop 0.2%
UAA7
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_020642.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,029959 bp+41.2%
tRNA-ValTransfer RNA1,0301,09667 bp+–
16S rRNARibosomal RNA1,0962,6681,573 bp+40.1%
tRNA-Leu (UUR)Transfer RNA2,6692,74375 bp+–
ND1Protein-coding gene2,7463,700955 bp+43.8%
tRNA-IleTransfer RNA3,7013,77070 bp+–
tRNA-GlnTransfer RNA3,7683,84174 bp−–
tRNA-MetTransfer RNA3,8433,91169 bp+–
ND2Protein-coding gene3,9124,9531,042 bp+40.5%
tRNA-TrpTransfer RNA4,9545,02067 bp+–
tRNA-AlaTransfer RNA5,0305,09869 bp+–
tRNA-AsnTransfer RNA5,1005,17273 bp+–
tRNA-CysTransfer RNA5,2065,27267 bp−–
tRNA-TyrTransfer RNA5,2725,34069 bp−–
COX1Protein-coding gene5,3426,8861,545 bp+44.3%
tRNA-Ser (UCN)Transfer RNA6,8876,95468 bp−–
tRNA-AspTransfer RNA6,9597,02567 bp+–
COX2Protein-coding gene7,0267,709684 bp+44.2%
tRNA-LysTransfer RNA7,7137,77967 bp+–
ATP8Protein-coding gene7,7817,984204 bp+33.3%
ATP6Protein-coding gene7,9428,622681 bp+43.5%
COX3Protein-coding gene8,6239,406784 bp+46.9%
tRNA-GlyTransfer RNA9,4079,47670 bp+–
ND3Protein-coding gene9,4779,824348 bp+44.0%
tRNA-ArgTransfer RNA9,8259,89268 bp+–
ND4LProtein-coding gene9,89310,189297 bp+41.1%
ND4Protein-coding gene10,18311,5601,378 bp+42.8%
tRNA-HisTransfer RNA11,56111,62969 bp+–
tRNA-Ser (AGY)Transfer RNA11,63011,69162 bp+–
tRNA-Leu (CUN)Transfer RNA11,69211,76170 bp+–
ND5Protein-coding gene11,75313,5821,830 bp+41.5%
ND6Protein-coding gene13,56614,099534 bp−38.6%
tRNA-GluTransfer RNA14,10014,16869 bp−–
CYTBProtein-coding gene14,17315,3121,140 bp+45.4%
tRNA-ThrTransfer RNA15,31315,38068 bp+–
tRNA-ProTransfer RNA15,38115,44565 bp−–
D-loopControl region15,44616,5141,069 bp–45.2%

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