MitoAge

Martes flavigula

Yellow-throated marten

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Maximum lifespan
16 yr
AnAge record
mtDNA size
16,549 bp
RefSeq NC_012141.1
GC content
41.01%
Whole genome
Non-coding
1,171 bp
D-loop 1,107 bp

Where Yellow-throated marten sits among 2,335 species

Whole-genome GC content against maximum lifespan. Yellow-throated marten has the 1,156th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Yellow-throated marten
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,549 bp
GC skew (G − C) / (G + C)
−0.312
AT skew (A − T) / (A + T)
+0.101

Life history

Maximum lifespan
16 years
Adult weight
2.5 kg
Birth weight
57.5 g
Female sexual maturity
3.5 years
Gestation or incubation
150 days
Litter or clutch size
2.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02183)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,549 bp
Protein-coding11,350 bp
12S rRNA962 bp
16S rRNA1,570 bp
All tRNA1,508 bp
D-loop1,107 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp30.3%26.9%12.0%30.8%42.78%−0.438+0.060
ND2NADH dehydrogenase subunit 21,042 bp35.3%25.6%10.0%29.1%39.06%−0.489+0.159
COX1Cytochrome c oxidase subunit I1,545 bp28.0%29.1%17.5%25.4%42.91%−0.186−0.018
COX2Cytochrome c oxidase subunit II683 bp31.5%27.1%14.2%27.2%41.44%−0.314+0.075
ATP8ATP synthase F0 subunit 8204 bp37.3%27.0%8.3%27.5%35.78%−0.534+0.160
ATP6ATP synthase F0 subunit 6681 bp30.7%28.9%11.7%28.6%40.38%−0.418+0.030
COX3Cytochrome c oxidase subunit III784 bp26.0%28.2%15.9%29.8%45.79%−0.304−0.040
ND3NADH dehydrogenase subunit 3347 bp31.7%27.4%13.3%27.7%40.92%−0.352+0.073
ND4LNADH dehydrogenase subunit 4L296 bp28.7%31.4%12.5%27.4%39.87%−0.373−0.045
ND4NADH dehydrogenase subunit 41,375 bp32.4%26.5%11.6%29.5%41.02%−0.436+0.100
ND5NADH dehydrogenase subunit 51,830 bp32.3%26.6%11.6%29.5%41.09%−0.434+0.098
ND6NADH dehydrogenase subunit 6534 bp41.0%20.0%10.9%28.1%38.95%−0.442+0.344
CYTBCytochrome b1,140 bp28.9%27.3%13.9%30.0%43.86%−0.368+0.028
12S rRNA12S ribosomal RNA962 bp37.2%23.0%17.6%22.2%39.81%−0.117+0.237
16S rRNA16S ribosomal RNA1,570 bp36.8%24.0%17.6%21.6%39.24%−0.101+0.210
D-loopControl region (D-loop)1,107 bp30.4%26.6%15.3%27.7%43.00%−0.290+0.068

Codon usage

Counts per codon, darker is more frequent

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU82
UUC153
Leu L15.9%
UUA98
UUG20
CUU63
CUC87
CUA272
CUG63
Ile I8.8%
AUU135
AUC198
Met M6.3%
AUA182
AUG56
Val V5.0%
GUU40
GUC35
GUA95
GUG21
Ser S7.3%
UCU37
UCC87
UCA100
UCG6
AGU17
AGC32
Pro P5.2%
CCU47
CCC78
CCA69
CCG4
Thr T8.3%
ACU63
ACC108
ACA131
ACG15
Ala A6.6%
GCU43
GCC105
GCA92
GCG10
Tyr Y3.4%
UAU52
UAC79
His H2.6%
CAU32
CAC65
Gln Q2.3%
CAA73
CAG16
Asn N4.1%
AAU60
AAC97
Lys K2.7%
AAA86
AAG16
Asp D1.7%
GAU20
GAC46
Glu E2.6%
GAA80
GAG17
Cys C0.6%
UGU6
UGC18
Trp W2.8%
UGA100
UGG6
Arg R1.7%
CGU9
CGC12
CGA38
CGG6
Gly G5.7%
GGU38
GGC53
GGA97
GGG30
Stop 0.2%
UAA5
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_012141.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,032962 bp+39.8%
tRNA-ValTransfer RNA1,0341,10067 bp+–
16S rRNARibosomal RNA1,1012,6701,570 bp+39.2%
tRNA-Leu (UUR)Transfer RNA2,6712,74575 bp+–
ND1Protein-coding gene2,7483,703956 bp+42.8%
tRNA-IleTransfer RNA3,7043,77269 bp+–
tRNA-GlnTransfer RNA3,7703,84374 bp−–
tRNA-MetTransfer RNA3,8453,91369 bp+–
ND2Protein-coding gene3,9144,9551,042 bp+39.1%
tRNA-TrpTransfer RNA4,9565,02267 bp+–
tRNA-AlaTransfer RNA5,0325,10069 bp−–
tRNA-AsnTransfer RNA5,1025,17473 bp−–
tRNA-CysTransfer RNA5,2085,27467 bp−–
tRNA-TyrTransfer RNA5,2755,34268 bp−–
COX1Protein-coding gene5,3446,8881,545 bp+42.9%
tRNA-Ser (UCN)Transfer RNA6,8866,95469 bp−–
tRNA-AspTransfer RNA6,9617,02767 bp+–
COX2Protein-coding gene7,0287,710683 bp+41.4%
tRNA-LysTransfer RNA7,7157,78167 bp+–
ATP8Protein-coding gene7,7837,986204 bp+35.8%
ATP6Protein-coding gene7,9448,624681 bp+40.4%
COX3Protein-coding gene8,6249,407784 bp+45.8%
tRNA-GlyTransfer RNA9,4089,47669 bp+–
ND3Protein-coding gene9,4779,823347 bp+40.9%
tRNA-ArgTransfer RNA9,8259,89268 bp+–
ND4LProtein-coding gene9,89310,188296 bp+39.9%
ND4Protein-coding gene10,18311,5571,375 bp+41.0%
tRNA-HisTransfer RNA11,55811,62669 bp+–
tRNA-Ser (AGY)Transfer RNA11,62711,68862 bp+–
tRNA-Leu (CUN)Transfer RNA11,68911,75870 bp+–
ND5Protein-coding gene11,75013,5791,830 bp+41.1%
ND6Protein-coding gene13,56314,096534 bp−39.0%
tRNA-GluTransfer RNA14,09714,16569 bp−–
CYTBProtein-coding gene14,17015,3091,140 bp+43.9%
tRNA-ThrTransfer RNA15,31015,37768 bp+–
tRNA-ProTransfer RNA15,37715,44266 bp−–
D-loopControl region15,44316,5491,107 bp–43.0%

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