Martes foina
Beech marten
GC content
41.89%
Whole genome
Non-coding
1,146 bp
D-loop 1,087 bp
Where Beech marten sits among 2,335 species
Whole-genome GC content against maximum lifespan. Beech marten has the 1,027th longest lifespan of them.
- This species
- Other mammals
- Other classes
Base composition
Whole genome16,530 bp
- GC skew (G − C) / (G + C)
- −0.310
- AT skew (A − T) / (A + T)
- +0.105
Life history
- Maximum lifespan
- 18.2 years
- Adult weight
- 1.7 kg
- Birth weight
- 30 g
- Female sexual maturity
- 548 days
- Male sexual maturity
- 2 years
- Gestation or incubation
- 30 days
- Litter or clutch size
- 3.5
- Litters per year
- 1
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02184)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,530 bp
Protein-coding11,354 bp
12S rRNA959 bp
16S rRNA1,571 bp
All tRNA1,510 bp
D-loop1,087 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 955 bp | 43.14% | −0.422 | +0.053 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 38.96% | −0.458 | +0.170 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 43.37% | −0.176 | −0.022 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 42.69% | −0.308 | +0.066 | |||||
| ATP8ATP synthase F0 subunit 8 | 204 bp | 32.35% | −0.515 | +0.116 | |||||
| ATP6ATP synthase F0 subunit 6 | 681 bp | 42.14% | −0.415 | +0.041 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.54% | −0.333 | +0.002 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 42.24% | −0.306 | +0.035 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.76% | −0.354 | −0.071 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 42.16% | −0.418 | +0.094 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,830 bp | 41.09% | −0.431 | +0.113 | |||||
| ND6NADH dehydrogenase subunit 6 | 534 bp | 39.33% | −0.457 | +0.364 | |||||
| CYTBCytochrome b | 1,140 bp | 46.14% | −0.369 | +0.026 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 40.67% | −0.113 | +0.237 | |||||
| 16S rRNA16S ribosomal RNA | 1,571 bp | 40.68% | −0.121 | +0.227 | |||||
| D-loopControl region (D-loop) | 1,087 bp | 44.89% | −0.336 | +0.078 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU78
UUC157
Leu L16.0%
UUA98
UUG21
CUU62
CUC89
CUA266
CUG72
Ile I8.6%
AUU141
AUC188
Met M6.6%
AUA193
AUG58
Val V5.0%
GUU40
GUC39
GUA96
GUG16
Ser S7.4%
UCU40
UCC83
UCA85
UCG18
AGU15
AGC42
Pro P5.1%
CCU42
CCC77
CCA73
CCG3
Thr T8.2%
ACU54
ACC112
ACA122
ACG24
Ala A6.6%
GCU46
GCC102
GCA93
GCG9
Tyr Y3.3%
UAU45
UAC82
His H2.6%
CAU21
CAC78
Gln Q2.3%
CAA71
CAG18
Asn N4.0%
AAU41
AAC110
Lys K2.7%
AAA95
AAG7
Asp D1.8%
GAU19
GAC51
Glu E2.6%
GAA69
GAG29
Cys C0.6%
UGU11
UGC12
Trp W2.8%
UGA87
UGG18
Arg R1.7%
CGU10
CGC12
CGA39
CGG3
Gly G5.6%
GGU35
GGC61
GGA86
GGG33
Stop 0.2%
UAA7
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_020643.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,030 | 959 bp | + | 40.7% |
| tRNA-Val | Transfer RNA | 1,031 | 1,097 | 67 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,097 | 2,667 | 1,571 bp | + | 40.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,668 | 2,742 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,745 | 3,699 | 955 bp | + | 43.1% |
| tRNA-Ile | Transfer RNA | 3,700 | 3,769 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,767 | 3,840 | 74 bp | − | – |
| tRNA-Met | Transfer RNA | 3,842 | 3,910 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,911 | 4,952 | 1,042 bp | + | 39.0% |
| tRNA-Trp | Transfer RNA | 4,953 | 5,019 | 67 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,029 | 5,097 | 69 bp | + | – |
| tRNA-Asn | Transfer RNA | 5,099 | 5,171 | 73 bp | + | – |
| tRNA-Cys | Transfer RNA | 5,205 | 5,271 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,271 | 5,339 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,341 | 6,885 | 1,545 bp | + | 43.4% |
| tRNA-Ser (UCN) | Transfer RNA | 6,886 | 6,953 | 68 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,958 | 7,024 | 67 bp | + | – |
| COX2 | Protein-coding gene | 7,025 | 7,708 | 684 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,712 | 7,778 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 7,780 | 7,983 | 204 bp | + | 32.4% |
| ATP6 | Protein-coding gene | 7,941 | 8,621 | 681 bp | + | 42.1% |
| COX3 | Protein-coding gene | 8,621 | 9,404 | 784 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,405 | 9,474 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,475 | 9,822 | 348 bp | + | 42.2% |
| tRNA-Arg | Transfer RNA | 9,823 | 9,890 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,891 | 10,187 | 297 bp | + | 42.8% |
| ND4 | Protein-coding gene | 10,181 | 11,558 | 1,378 bp | + | 42.2% |
| tRNA-His | Transfer RNA | 11,559 | 11,627 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,628 | 11,689 | 62 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,690 | 11,759 | 70 bp | + | – |
| ND5 | Protein-coding gene | 11,751 | 13,580 | 1,830 bp | + | 41.1% |
| ND6 | Protein-coding gene | 13,564 | 14,097 | 534 bp | − | 39.3% |
| tRNA-Glu | Transfer RNA | 14,098 | 14,166 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,171 | 15,310 | 1,140 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,311 | 15,378 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,379 | 15,443 | 65 bp | − | – |
| D-loop | Control region | 15,444 | 16,530 | 1,087 bp | – | 44.9% |