MitoAge

Martes martes

European pine marten

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Maximum lifespan
18.2 yr
AnAge record
mtDNA size
16,486 bp
RefSeq NC_021749.1
GC content
42.29%
Whole genome
Non-coding
1,103 bp
D-loop 1,042 bp

Where European pine marten sits among 2,335 species

Whole-genome GC content against maximum lifespan. European pine marten has the 1,028th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %European pine marten
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,486 bp
GC skew (G − C) / (G + C)
−0.304
AT skew (A − T) / (A + T)
+0.106

Life history

Maximum lifespan
18.2 years
Adult weight
1.3 kg
Birth weight
30 g
Basal metabolic rate
4 W
Body temperature
37 °C
Female sexual maturity
456 days
Male sexual maturity
426 days
Gestation or incubation
28 days
Litter or clutch size
4
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02185)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,486 bp
Protein-coding11,355 bp
12S rRNA962 bp
16S rRNA1,570 bp
All tRNA1,509 bp
D-loop1,042 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp29.7%26.0%12.8%31.5%44.25%−0.423+0.066
ND2NADH dehydrogenase subunit 21,042 bp34.5%24.3%11.6%29.6%41.17%−0.436+0.175
COX1Cytochrome c oxidase subunit I1,545 bp27.9%28.9%17.9%25.3%43.17%−0.172−0.018
COX2Cytochrome c oxidase subunit II684 bp30.7%26.2%14.9%28.2%43.13%−0.308+0.080
ATP8ATP synthase F0 subunit 8204 bp39.2%26.0%8.3%26.5%34.80%−0.521+0.203
ATP6ATP synthase F0 subunit 6681 bp30.1%27.2%11.9%30.8%42.73%−0.443+0.051
COX3Cytochrome c oxidase subunit III784 bp26.8%27.8%15.9%29.5%45.41%−0.298−0.019
ND3NADH dehydrogenase subunit 3348 bp29.9%25.6%14.9%29.6%44.54%−0.329+0.078
ND4LNADH dehydrogenase subunit 4L297 bp25.9%31.0%14.1%29.0%43.10%−0.344−0.089
ND4NADH dehydrogenase subunit 41,378 bp31.0%26.0%12.8%30.3%43.03%−0.406+0.088
ND5NADH dehydrogenase subunit 51,830 bp32.0%26.1%12.3%29.6%41.86%−0.413+0.102
ND6NADH dehydrogenase subunit 6534 bp40.3%18.7%12.0%29.0%41.01%−0.416+0.365
CYTBCytochrome b1,140 bp28.0%26.1%14.8%31.1%45.88%−0.354+0.034
12S rRNA12S ribosomal RNA962 bp37.0%22.2%17.8%23.0%40.75%−0.128+0.249
16S rRNA16S ribosomal RNA1,570 bp36.6%23.0%17.7%22.7%40.38%−0.123+0.229
D-loopControl region (D-loop)1,042 bp29.3%25.9%15.2%29.6%44.77%−0.322+0.061

Codon usage

Counts per codon, darker is more frequent

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU66
UUC171
Leu L15.9%
UUA91
UUG19
CUU67
CUC79
CUA274
CUG74
Ile I8.5%
AUU125
AUC198
Met M6.6%
AUA186
AUG64
Val V5.1%
GUU39
GUC44
GUA84
GUG27
Ser S7.4%
UCU38
UCC82
UCA86
UCG18
AGU15
AGC41
Pro P5.2%
CCU41
CCC79
CCA69
CCG8
Thr T8.1%
ACU57
ACC108
ACA125
ACG19
Ala A6.8%
GCU40
GCC110
GCA97
GCG12
Tyr Y3.4%
UAU35
UAC95
His H2.6%
CAU25
CAC73
Gln Q2.3%
CAA71
CAG16
Asn N3.9%
AAU42
AAC106
Lys K2.7%
AAA85
AAG17
Asp D1.8%
GAU17
GAC52
Glu E2.5%
GAA64
GAG33
Cys C0.6%
UGU9
UGC14
Trp W2.8%
UGA95
UGG10
Arg R1.7%
CGU11
CGC11
CGA40
CGG3
Gly G5.8%
GGU38
GGC60
GGA88
GGG34
Stop 0.2%
UAA8
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_021749.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,032962 bp+40.8%
tRNA-ValTransfer RNA1,0331,09967 bp+–
16S rRNARibosomal RNA1,0992,6681,570 bp+40.4%
tRNA-Leu (UUR)Transfer RNA2,6692,74375 bp+–
ND1Protein-coding gene2,7463,701956 bp+44.3%
tRNA-IleTransfer RNA3,7023,77069 bp+–
tRNA-GlnTransfer RNA3,7683,84174 bp−–
tRNA-MetTransfer RNA3,8433,91169 bp+–
ND2Protein-coding gene3,9124,9531,042 bp+41.2%
tRNA-TrpTransfer RNA4,9545,02067 bp+–
tRNA-AlaTransfer RNA5,0305,09869 bp−–
tRNA-AsnTransfer RNA5,1005,17273 bp−–
tRNA-CysTransfer RNA5,2065,27267 bp−–
tRNA-TyrTransfer RNA5,2735,34068 bp−–
COX1Protein-coding gene5,3426,8861,545 bp+43.2%
tRNA-Ser (UCN)Transfer RNA6,8846,95269 bp−–
tRNA-AspTransfer RNA6,9597,02567 bp+–
COX2Protein-coding gene7,0267,709684 bp+43.1%
tRNA-LysTransfer RNA7,7137,77967 bp+–
ATP8Protein-coding gene7,7817,984204 bp+34.8%
ATP6Protein-coding gene7,9428,622681 bp+42.7%
COX3Protein-coding gene8,6229,405784 bp+45.4%
tRNA-GlyTransfer RNA9,4069,47570 bp+–
ND3Protein-coding gene9,4769,823348 bp+44.5%
tRNA-ArgTransfer RNA9,8249,89168 bp+–
ND4LProtein-coding gene9,89210,188297 bp+43.1%
ND4Protein-coding gene10,18211,5591,378 bp+43.0%
tRNA-HisTransfer RNA11,56011,62869 bp+–
tRNA-Ser (AGY)Transfer RNA11,62911,69062 bp+–
tRNA-Leu (CUN)Transfer RNA11,69111,76070 bp+–
ND5Protein-coding gene11,75213,5811,830 bp+41.9%
ND6Protein-coding gene13,56514,098534 bp−41.0%
tRNA-GluTransfer RNA14,09914,16769 bp−–
CYTBProtein-coding gene14,17215,3111,140 bp+45.9%
tRNA-ThrTransfer RNA15,31215,37968 bp+–
tRNA-ProTransfer RNA15,37915,44466 bp−–
D-loopControl region15,44516,4861,042 bp–44.8%

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