Mauremys annamensis
Annam leaf turtle
GC content
39.43%
Whole genome
Non-coding
1,225 bp
D-loop 1,176 bp
Where Annam leaf turtle sits among 2,335 species
Whole-genome GC content against maximum lifespan. Annam leaf turtle has the 701st longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome16,844 bp
- GC skew (G − C) / (G + C)
- −0.338
- AT skew (A − T) / (A + T)
- +0.113
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,844 bp
Protein-coding11,365 bp
12S rRNA1,118 bp
16S rRNA1,597 bp
All tRNA1,553 bp
D-loop1,176 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 971 bp | 39.96% | −0.418 | +0.057 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 39.85% | −0.483 | +0.181 | |||||
| COX1Cytochrome c oxidase subunit I | 1,548 bp | 41.47% | −0.165 | −0.040 | |||||
| COX2Cytochrome c oxidase subunit II | 690 bp | 38.70% | −0.318 | +0.111 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.565 | +0.232 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.28% | −0.482 | +0.096 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.11% | −0.260 | +0.045 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 36.10% | −0.476 | +0.022 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 43.67% | −0.374 | −0.065 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,377 bp | 41.10% | −0.424 | +0.139 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,806 bp | 39.81% | −0.499 | +0.133 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 38.45% | −0.567 | +0.508 | |||||
| CYTBCytochrome b | 1,144 bp | 44.14% | −0.461 | +0.070 | |||||
| 12S rRNA12S ribosomal RNA | 1,118 bp | 41.68% | −0.180 | +0.236 | |||||
| 16S rRNA16S ribosomal RNA | 1,597 bp | 39.95% | −0.182 | +0.287 | |||||
| D-loopControl region (D-loop) | 1,176 bp | 27.13% | −0.223 | −0.109 |
Codon usage
Counts per codon, darker is more frequent3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU89
UUC133
Leu L16.2%
UUA152
UUG22
CUU69
CUC88
CUA252
CUG30
Ile I8.3%
AUU147
AUC169
Met M6.4%
AUA202
AUG40
Val V4.3%
GUU31
GUC30
GUA86
GUG15
Ser S6.9%
UCU40
UCC62
UCA112
UCG3
AGU15
AGC29
Pro P5.6%
CCU33
CCC46
CCA122
CCG12
Thr T8.9%
ACU60
ACC131
ACA142
ACG5
Ala A7.1%
GCU52
GCC119
GCA88
GCG10
Tyr Y3.1%
UAU56
UAC62
His H2.7%
CAU43
CAC59
Gln Q2.7%
CAA97
CAG5
Asn N3.8%
AAU44
AAC100
Lys K2.4%
AAA88
AAG2
Asp D1.7%
GAU21
GAC42
Glu E2.5%
GAA84
GAG9
Cys C0.9%
UGU12
UGC21
Trp W2.9%
UGA101
UGG9
Arg R1.8%
CGU14
CGC8
CGA43
CGG4
Gly G6.0%
GGU30
GGC65
GGA99
GGG32
Stop 0.2%
UAA6
UAG0
AGA0
AGG2
Genome map
38 annotated features in NC_017875.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,187 | 1,118 bp | + | 41.7% |
| tRNA-Val | Transfer RNA | 1,188 | 1,257 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,257 | 2,853 | 1,597 bp | + | 40.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,854 | 2,929 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,930 | 3,900 | 971 bp | + | 40.0% |
| tRNA-Ile | Transfer RNA | 3,901 | 3,970 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,970 | 4,040 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,040 | 4,108 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,109 | 5,147 | 1,039 bp | + | 39.9% |
| tRNA-Trp | Transfer RNA | 5,148 | 5,225 | 78 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,227 | 5,295 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,297 | 5,369 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,396 | 5,461 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,462 | 5,532 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,534 | 7,081 | 1,548 bp | + | 41.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,073 | 7,143 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,146 | 7,215 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,216 | 7,905 | 690 bp | + | 38.7% |
| tRNA-Lys | Transfer RNA | 7,907 | 7,979 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,981 | 8,148 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,139 | 8,822 | 684 bp | + | 37.3% |
| COX3 | Protein-coding gene | 8,822 | 9,605 | 784 bp | + | 43.1% |
| tRNA-Gly | Transfer RNA | 9,606 | 9,673 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,674 | 10,023 | 350 bp | + | 36.1% |
| tRNA-Arg | Transfer RNA | 10,024 | 10,093 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,094 | 10,393 | 300 bp | + | 43.7% |
| ND4 | Protein-coding gene | 10,387 | 11,763 | 1,377 bp | + | 41.1% |
| tRNA-His | Transfer RNA | 11,776 | 11,845 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,846 | 11,912 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,912 | 11,983 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,984 | 13,789 | 1,806 bp | + | 39.8% |
| ND6 | Protein-coding gene | 13,785 | 14,312 | 528 bp | − | 38.5% |
| tRNA-Glu | Transfer RNA | 14,310 | 14,377 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,381 | 15,524 | 1,144 bp | + | 44.1% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,598 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,600 | 15,669 | 70 bp | − | – |
| D-loop | Control region | 15,669 | 16,844 | 1,176 bp | – | 27.1% |