MitoAge

Mauremys mutica

Yellow pond turtle

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Maximum lifespan
22.1 yr
AnAge record
mtDNA size
16,609 bp
RefSeq NC_009330.1
GC content
39.68%
Whole genome
Non-coding
1,136 bp
D-loop 1,071 bp

Where Yellow pond turtle sits among 2,335 species

Whole-genome GC content against maximum lifespan. Yellow pond turtle has the 779th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Yellow pond turtle
  • This species
  • Other reptiles
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,609 bp
GC skew (G − C) / (G + C)
−0.336
AT skew (A − T) / (A + T)
+0.121

Life history

Maximum lifespan
22.1 years
Adult weight
319.5 g

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03731)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,609 bp
Protein-coding11,367 bp
12S rRNA972 bp
16S rRNA1,596 bp
All tRNA1,551 bp
D-loop1,071 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1972 bp32.1%28.2%11.2%28.5%39.71%−0.435+0.065
ND2NADH dehydrogenase subunit 21,039 bp35.7%23.7%11.8%28.8%40.62%−0.417+0.203
COX1Cytochrome c oxidase subunit I1,548 bp28.2%30.0%17.2%24.5%41.80%−0.175−0.032
COX2Cytochrome c oxidase subunit II690 bp34.5%27.2%13.2%25.1%38.26%−0.311+0.117
ATP8ATP synthase F0 subunit 8168 bp38.1%24.4%7.7%29.8%37.50%−0.587+0.219
ATP6ATP synthase F0 subunit 6684 bp33.5%28.1%10.4%28.1%38.45%−0.460+0.088
COX3Cytochrome c oxidase subunit III785 bp30.2%27.0%15.4%27.4%42.80%−0.280+0.056
ND3NADH dehydrogenase subunit 3349 bp31.2%30.7%11.5%26.6%38.11%−0.399+0.009
ND4LNADH dehydrogenase subunit 4L300 bp27.7%31.0%12.3%29.0%41.33%−0.403−0.057
ND4NADH dehydrogenase subunit 41,377 bp33.5%25.7%12.1%28.8%40.81%−0.409+0.131
ND5NADH dehydrogenase subunit 51,806 bp34.2%25.7%10.0%30.1%40.09%−0.500+0.142
ND6NADH dehydrogenase subunit 6525 bp47.0%14.3%8.0%30.7%38.67%−0.586+0.534
CYTBCytochrome b1,147 bp30.3%26.2%11.6%32.0%43.59%−0.468+0.073
12S rRNA12S ribosomal RNA972 bp36.6%22.3%17.0%24.1%41.05%−0.173+0.243
16S rRNA16S ribosomal RNA1,596 bp38.3%21.5%16.9%23.3%40.23%−0.159+0.281
D-loopControl region (D-loop)1,071 bp32.5%37.4%11.2%18.9%30.07%−0.255−0.071

Codon usage

Counts per codon, darker is more frequent

3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU85
UUC143
Leu L15.8%
UUA149
UUG24
CUU68
CUC81
CUA249
CUG30
Ile I8.4%
AUU149
AUC168
Met M6.3%
AUA208
AUG30
Val V4.3%
GUU32
GUC28
GUA84
GUG19
Ser S6.9%
UCU38
UCC62
UCA115
UCG2
AGU18
AGC26
Pro P5.6%
CCU30
CCC41
CCA125
CCG15
Thr T9.1%
ACU59
ACC135
ACA144
ACG7
Ala A6.9%
GCU52
GCC116
GCA83
GCG9
Tyr Y3.2%
UAU43
UAC78
His H2.7%
CAU47
CAC56
Gln Q2.7%
CAA98
CAG4
Asn N3.9%
AAU41
AAC108
Lys K2.4%
AAA85
AAG5
Asp D1.6%
GAU23
GAC39
Glu E2.5%
GAA79
GAG14
Cys C0.9%
UGU13
UGC20
Trp W2.9%
UGA95
UGG15
Arg R1.8%
CGU14
CGC7
CGA45
CGG4
Gly G6.0%
GGU31
GGC59
GGA102
GGG37
Stop 0.2%
UAA6
UAG1
AGA0
AGG2

Genome map

38 annotated features in NC_009330.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,041972 bp+41.1%
tRNA-ValTransfer RNA1,0421,11170 bp+–
16S rRNARibosomal RNA1,1122,7071,596 bp+40.2%
tRNA-Leu (UUR)Transfer RNA2,7072,78276 bp+–
ND1Protein-coding gene2,7833,754972 bp+39.7%
tRNA-IleTransfer RNA3,7543,82370 bp+–
tRNA-GlnTransfer RNA3,8233,89371 bp−–
tRNA-MetTransfer RNA3,8933,96169 bp+–
ND2Protein-coding gene3,9625,0001,039 bp+40.6%
tRNA-TrpTransfer RNA5,0015,07878 bp+–
tRNA-AlaTransfer RNA5,0805,14869 bp−–
tRNA-AsnTransfer RNA5,1505,22273 bp−–
tRNA-CysTransfer RNA5,2495,31466 bp−–
tRNA-TyrTransfer RNA5,3155,38571 bp−–
COX1Protein-coding gene5,3876,9341,548 bp+41.8%
tRNA-Ser (UCN)Transfer RNA6,9266,99671 bp−–
tRNA-AspTransfer RNA6,9997,06870 bp+–
COX2Protein-coding gene7,0697,758690 bp+38.3%
tRNA-LysTransfer RNA7,7607,83273 bp+–
ATP8Protein-coding gene7,8348,001168 bp+37.5%
ATP6Protein-coding gene7,9928,675684 bp+38.5%
COX3Protein-coding gene8,6759,459785 bp+42.8%
tRNA-GlyTransfer RNA9,4599,52668 bp+–
ND3Protein-coding gene9,5279,876350 bp+38.1%
tRNA-ArgTransfer RNA9,8779,94771 bp+–
ND4LProtein-coding gene9,94710,246300 bp+41.3%
ND4Protein-coding gene10,24011,6161,377 bp+40.8%
tRNA-HisTransfer RNA11,62911,69870 bp+–
tRNA-Ser (AGY)Transfer RNA11,69911,76567 bp+–
tRNA-Leu (CUN)Transfer RNA11,76511,83672 bp+–
ND5Protein-coding gene11,83713,6421,806 bp+40.1%
ND6Protein-coding gene13,63814,162525 bp−38.7%
tRNA-GluTransfer RNA14,16314,23068 bp−–
CYTBProtein-coding gene14,23415,3801,147 bp+43.6%
tRNA-ThrTransfer RNA15,39615,46772 bp+–
tRNA-ProTransfer RNA15,46915,53870 bp−–
D-loopControl region15,53916,6091,071 bp–30.1%

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