Megalops cyprinoides

Oxeye

Maximum lifespan

44 yr

AnAge record

mtDNA size

16,412 bp

RefSeq NC_005799.1

GC content

45.16%

Whole genome

Non-coding

756 bp

D-loop 661 bp

Where Oxeye sits among 2,335 species

Whole-genome GC content against maximum lifespan. Oxeye has the 204th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,412 bp

GC skew (G − C) / (G + C): −0.308
AT skew (A − T) / (A + T): +0.183

Life history

Maximum lifespan: 44 years
Adult weight: 9.9 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04010)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,412 bp

Protein-coding11,454 bp

12S rRNA953 bp

16S rRNA1,698 bp

All tRNA1,560 bp

D-loop661 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Megalops cyprinoides genes

ND1NADH dehydrogenase subunit 1	975 bp	31.8%	21.7%	14.6%	31.9%	46.46%	−0.373	+0.188
ND2NADH dehydrogenase subunit 2	1,045 bp	35.2%	18.2%	11.9%	34.7%	46.60%	−0.491	+0.319
COX1Cytochrome c oxidase subunit I	1,596 bp	26.8%	27.5%	18.0%	27.7%	45.74%	−0.211	−0.014
COX2Cytochrome c oxidase subunit II	691 bp	30.0%	23.3%	17.5%	29.2%	46.74%	−0.251	+0.125
ATP8ATP synthase F0 subunit 8	168 bp	39.3%	23.2%	8.9%	28.6%	37.50%	−0.524	+0.257
ATP6ATP synthase F0 subunit 6	683 bp	29.1%	25.6%	13.5%	31.8%	45.24%	−0.405	+0.064
COX3Cytochrome c oxidase subunit III	785 bp	27.0%	24.6%	16.9%	31.5%	48.41%	−0.300	+0.047
ND3NADH dehydrogenase subunit 3	349 bp	24.1%	28.1%	14.9%	33.0%	47.85%	−0.377	−0.077
ND4LNADH dehydrogenase subunit 4L	297 bp	27.9%	25.3%	14.5%	32.3%	46.80%	−0.381	+0.051
ND4NADH dehydrogenase subunit 4	1,381 bp	32.7%	22.9%	13.4%	31.0%	44.39%	−0.396	+0.177
ND5NADH dehydrogenase subunit 5	1,842 bp	34.7%	21.6%	12.5%	31.2%	43.70%	−0.426	+0.232
ND6NADH dehydrogenase subunit 6	522 bp	42.1%	9.4%	11.9%	36.6%	48.47%	−0.510	+0.636
CYTBCytochrome b	1,141 bp	30.3%	25.4%	14.0%	30.2%	44.26%	−0.366	+0.088
12S rRNA12S ribosomal RNA	953 bp	33.1%	17.0%	20.5%	29.5%	49.95%	−0.181	+0.321
16S rRNA16S ribosomal RNA	1,698 bp	37.5%	15.5%	19.4%	27.6%	46.94%	−0.174	+0.414
D-loopControl region (D-loop)	661 bp	38.4%	36.2%	13.2%	12.3%	25.42%	+0.036	+0.030

Codon usage

Counts per codon, darker is more frequent

Gene

3,822 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU72

UUC157

Leu L16.2%

UUA83

UUG31

CUU66

CUC94

CUA300

CUG45

Ile I7.1%

AUU84

AUC188

Met M5.0%

AUA154

AUG39

Val V5.2%

GUU35

GUC37

GUA94

GUG34

Ser S6.3%

UCU27

UCC59

UCA89

UCG6

AGU6

AGC54

Pro P5.8%

CCU19

CCC53

CCA135

CCG14

Thr T8.8%

ACU31

ACC129

ACA166

ACG10

Ala A8.7%

GCU41

GCC153

GCA126

GCG13

Tyr Y3.0%

UAU30

UAC86

His H2.7%

CAU17

CAC86

Gln Q2.7%

CAA93

CAG11

Asn N3.3%

AAU18

AAC109

Lys K2.0%

AAA74

AAG3

Asp D2.1%

GAU13

GAC68

Glu E2.5%

GAA76

GAG21

Cys C0.7%

UGU8

UGC19

Trp W3.2%

UGA100

UGG21

Arg R2.0%

CGU6

CGC14

CGA52

CGG5

Gly G6.3%

GGU20

GGC63

GGA118

GGG41

Stop 0.2%

UAA4

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_005799.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Megalops cyprinoides (NC_005799.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	71	71 bp	+	–
12S rRNA	Ribosomal RNA	72	1,024	953 bp	+	50.0%
tRNA-Val	Transfer RNA	1,025	1,098	74 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,796	1,698 bp	+	46.9%
tRNA-Leu (UUR)	Transfer RNA	2,797	2,871	75 bp	+	–
ND1	Protein-coding gene	2,872	3,846	975 bp	+	46.5%
tRNA-Ile	Transfer RNA	3,858	3,929	72 bp	+	–
tRNA-Gln	Transfer RNA	3,929	3,999	71 bp	−	–
tRNA-Met	Transfer RNA	3,999	4,067	69 bp	+	–
ND2	Protein-coding gene	4,068	5,112	1,045 bp	+	46.6%
tRNA-Trp	Transfer RNA	5,113	5,181	69 bp	+	–
tRNA-Ala	Transfer RNA	5,183	5,251	69 bp	−	–
tRNA-Asn	Transfer RNA	5,253	5,325	73 bp	−	–
tRNA-Cys	Transfer RNA	5,368	5,433	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,434	5,504	71 bp	−	–
COX1	Protein-coding gene	5,506	7,101	1,596 bp	+	45.7%
tRNA-Ser (UCN)	Transfer RNA	7,093	7,163	71 bp	−	–
tRNA-Asp	Transfer RNA	7,169	7,240	72 bp	+	–
COX2	Protein-coding gene	7,255	7,945	691 bp	+	46.7%
tRNA-Lys	Transfer RNA	7,946	8,020	75 bp	+	–
ATP8	Protein-coding gene	8,022	8,189	168 bp	+	37.5%
ATP6	Protein-coding gene	8,180	8,862	683 bp	+	45.2%
COX3	Protein-coding gene	8,863	9,647	785 bp	+	48.4%
tRNA-Gly	Transfer RNA	9,648	9,719	72 bp	+	–
ND3	Protein-coding gene	9,720	10,068	349 bp	+	47.9%
tRNA-Arg	Transfer RNA	10,069	10,138	70 bp	+	–
ND4L	Protein-coding gene	10,139	10,435	297 bp	+	46.8%
ND4	Protein-coding gene	10,429	11,809	1,381 bp	+	44.4%
tRNA-His	Transfer RNA	11,810	11,878	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,878	11,946	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,948	12,020	73 bp	+	–
ND5	Protein-coding gene	12,021	13,862	1,842 bp	+	43.7%
ND6	Protein-coding gene	13,859	14,380	522 bp	−	48.5%
tRNA-Glu	Transfer RNA	14,381	14,449	69 bp	−	–
CYTB	Protein-coding gene	14,455	15,595	1,141 bp	+	44.3%
tRNA-Thr	Transfer RNA	15,597	15,669	73 bp	+	–
tRNA-Pro	Transfer RNA	15,682	15,751	70 bp	−	–
D-loop	Control region	15,752	16,412	661 bp	–	25.4%