MitoAge

Micropterus dolomieu

Smallmouth bass

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Maximum lifespan
26 yr
AnAge record
mtDNA size
16,488 bp
RefSeq NC_011361.1
GC content
46.72%
Whole genome
Non-coding
892 bp
D-loop 827 bp

Where Smallmouth bass sits among 2,335 species

Whole-genome GC content against maximum lifespan. Smallmouth bass has the 587th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Smallmouth bass
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,488 bp
GC skew (G − C) / (G + C)
−0.265
AT skew (A − T) / (A + T)
−0.002

Life history

Maximum lifespan
26 years
Adult weight
3 kg
Female sexual maturity
5.5 years
Male sexual maturity
5.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04127)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,488 bp
Protein-coding11,408 bp
12S rRNA947 bp
16S rRNA1,691 bp
All tRNA1,551 bp
D-loop827 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp24.5%29.4%15.4%30.7%46.05%−0.332−0.091
ND2NADH dehydrogenase subunit 21,047 bp25.3%26.4%13.3%35.1%48.33%−0.451−0.020
COX1Cytochrome c oxidase subunit I1,551 bp23.4%30.2%18.2%28.2%46.42%−0.217−0.126
COX2Cytochrome c oxidase subunit II691 bp28.7%26.9%15.9%28.5%44.43%−0.283+0.031
ATP8ATP synthase F0 subunit 8168 bp27.4%25.0%11.9%35.7%47.62%−0.500+0.045
ATP6ATP synthase F0 subunit 6683 bp23.1%29.7%14.5%32.7%47.15%−0.385−0.125
COX3Cytochrome c oxidase subunit III785 bp23.6%26.8%17.8%31.8%49.68%−0.282−0.063
ND3NADH dehydrogenase subunit 3349 bp21.5%30.1%16.0%32.4%48.42%−0.337−0.167
ND4LNADH dehydrogenase subunit 4L297 bp20.9%29.6%15.2%34.3%49.50%−0.388−0.173
ND4NADH dehydrogenase subunit 41,381 bp24.0%28.2%15.8%32.1%47.86%−0.340−0.081
ND5NADH dehydrogenase subunit 51,839 bp26.6%28.9%14.2%30.3%44.48%−0.362−0.042
ND6NADH dehydrogenase subunit 6522 bp35.2%15.1%15.1%34.5%49.62%−0.390+0.399
CYTBCytochrome b1,141 bp22.0%28.4%16.5%33.1%49.61%−0.336−0.127
12S rRNA12S ribosomal RNA947 bp31.0%21.1%21.9%26.0%47.84%−0.086+0.190
16S rRNA16S ribosomal RNA1,691 bp31.7%22.1%21.2%25.0%46.19%−0.083+0.178
D-loopControl region (D-loop)827 bp29.5%31.0%17.7%21.9%39.54%−0.107−0.024

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU131
UUC104
Leu L17.5%
UUA92
UUG20
CUU164
CUC177
CUA150
CUG64
Ile I7.0%
AUU169
AUC98
Met M3.9%
AUA90
AUG59
Val V5.7%
GUU60
GUC67
GUA59
GUG31
Ser S6.5%
UCU40
UCC82
UCA53
UCG14
AGU12
AGC46
Pro P5.8%
CCU61
CCC110
CCA35
CCG15
Thr T7.9%
ACU56
ACC122
ACA107
ACG16
Ala A9.3%
GCU63
GCC177
GCA100
GCG14
Tyr Y2.8%
UAU36
UAC72
His H2.8%
CAU32
CAC76
Gln Q2.5%
CAA80
CAG16
Asn N3.2%
AAU51
AAC69
Lys K1.9%
AAA64
AAG7
Asp D1.9%
GAU24
GAC49
Glu E2.7%
GAA70
GAG32
Cys C0.7%
UGU7
UGC19
Trp W3.2%
UGA85
UGG35
Arg R2.0%
CGU11
CGC19
CGA34
CGG11
Gly G6.4%
GGU39
GGC99
GGA62
GGG43
Stop 0.2%
UAA7
UAG0
AGA0
AGG0

Genome map

38 annotated features in NC_011361.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,015947 bp+47.8%
tRNA-ValTransfer RNA1,0161,08772 bp+–
16S rRNARibosomal RNA1,0882,7781,691 bp+46.2%
tRNA-Leu (UUR)Transfer RNA2,7792,85274 bp+–
ND1Protein-coding gene2,8533,827975 bp+46.1%
tRNA-IleTransfer RNA3,8323,90170 bp+–
tRNA-GlnTransfer RNA3,9013,97171 bp−–
tRNA-MetTransfer RNA3,9714,03969 bp+–
ND2Protein-coding gene4,0405,0861,047 bp+48.3%
tRNA-TrpTransfer RNA5,0865,15772 bp+–
tRNA-AlaTransfer RNA5,1605,22869 bp−–
tRNA-AsnTransfer RNA5,2305,30273 bp−–
tRNA-CysTransfer RNA5,3405,40667 bp−–
tRNA-TyrTransfer RNA5,4065,47671 bp−–
COX1Protein-coding gene5,4787,0281,551 bp+46.4%
tRNA-Ser (UCN)Transfer RNA7,0297,09971 bp−–
tRNA-AspTransfer RNA7,1037,17472 bp+–
COX2Protein-coding gene7,1827,872691 bp+44.4%
tRNA-LysTransfer RNA7,8737,94674 bp+–
ATP8Protein-coding gene7,9488,115168 bp+47.6%
ATP6Protein-coding gene8,1068,788683 bp+47.2%
COX3Protein-coding gene8,7899,573785 bp+49.7%
tRNA-GlyTransfer RNA9,5749,64572 bp+–
ND3Protein-coding gene9,6469,994349 bp+48.4%
tRNA-ArgTransfer RNA9,99510,06369 bp+–
ND4LProtein-coding gene10,06410,360297 bp+49.5%
ND4Protein-coding gene10,35411,7341,381 bp+47.9%
tRNA-HisTransfer RNA11,73511,80369 bp+–
tRNA-Ser (AGY)Transfer RNA11,80411,87168 bp+–
tRNA-Leu (CUN)Transfer RNA11,87611,94873 bp+–
ND5Protein-coding gene11,94913,7871,839 bp+44.5%
ND6Protein-coding gene13,78414,305522 bp−49.6%
tRNA-GluTransfer RNA14,30614,37469 bp−–
CYTBProtein-coding gene14,37915,5191,141 bp+49.6%
tRNA-ThrTransfer RNA15,52015,59172 bp+–
tRNA-ProTransfer RNA15,59115,66070 bp−–
D-loopControl region15,66216,488827 bp–39.5%

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