Mimachlamys varia
Variegated scallop
GC content
43.69%
Whole genome
Non-coding
5,530 bp
Including the D-loop
Where Variegated scallop sits among 2,335 species
Whole-genome GC content against maximum lifespan. Variegated scallop has the 1,828th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome20,400 bp
- GC skew (G − C) / (G + C)
- +0.265
- AT skew (A − T) / (A + T)
- −0.228
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome20,400 bp
Protein-coding10,932 bp
12S rRNA964 bp
16S rRNA1,422 bp
All tRNA1,556 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 900 bp | 43.94% | +0.322 | −0.361 | |||||
| ND2NADH dehydrogenase subunit 2 | 957 bp | 43.83% | +0.294 | −0.404 | |||||
| COX1Cytochrome c oxidase subunit I | 1,524 bp | 45.01% | +0.134 | −0.322 | |||||
| COX2Cytochrome c oxidase subunit II | 702 bp | 45.30% | +0.346 | −0.240 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 44.65% | +0.183 | −0.341 | |||||
| ATP6ATP synthase F0 subunit 6 | 672 bp | 43.16% | +0.269 | −0.429 | |||||
| COX3Cytochrome c oxidase subunit III | 771 bp | 44.55% | +0.294 | −0.354 | |||||
| ND3NADH dehydrogenase subunit 3 | 348 bp | 45.12% | +0.248 | −0.466 | |||||
| ND4LNADH dehydrogenase subunit 4L | 288 bp | 49.65% | +0.385 | −0.434 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,284 bp | 45.17% | +0.276 | −0.418 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,704 bp | 44.07% | +0.310 | −0.360 | |||||
| ND6NADH dehydrogenase subunit 6 | 498 bp | 45.38% | +0.221 | −0.382 | |||||
| CYTBCytochrome b | 1,125 bp | 44.00% | +0.277 | −0.289 | |||||
| 12S rRNA12S ribosomal RNA | 964 bp | 47.30% | +0.167 | +0.075 | |||||
| 16S rRNA16S ribosomal RNA | 1,422 bp | 43.38% | +0.240 | −0.060 |
Codon usage
Counts per codon, darker is more frequent3,641 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F9.4%
UUU257
UUC86
Leu L12.7%
UUA103
UUG121
CUU117
CUC18
CUA40
CUG62
Ile I5.1%
AUU159
AUC26
Met M4.2%
AUA46
AUG106
Val V10.2%
GUU168
GUC37
GUA63
GUG103
Ser S9.0%
UCU90
UCC25
UCA21
UCG20
AGU30
AGC23
AGA35
AGG82
Pro P4.0%
CCU77
CCC33
CCA12
CCG24
Thr T3.5%
ACU53
ACC22
ACA24
ACG30
Ala A5.7%
GCU107
GCC38
GCA35
GCG26
Tyr Y4.2%
UAU92
UAC61
His H1.9%
CAU39
CAC31
Gln Q1.6%
CAA9
CAG51
Asn N1.8%
AAU43
AAC21
Lys K2.6%
AAA7
AAG87
Asp D2.0%
GAU50
GAC23
Glu E3.1%
GAA30
GAG82
Cys C3.1%
UGU80
UGC34
Trp W3.6%
UGA12
UGG118
Arg R2.5%
CGU20
CGC17
CGA12
CGG43
Gly G9.5%
GGU89
GGC41
GGA50
GGG167
Stop 0.4%
UAA5
UAG8
Genome map
38 annotated features in NC_061741.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA23
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Asn | Transfer RNA | 1 | 69 | 69 bp | + | – |
| ND1 | Protein-coding gene | 94 | 993 | 900 bp | + | 43.9% |
| tRNA-Arg | Transfer RNA | 992 | 1,055 | 64 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,111 | 2,532 | 1,422 bp | + | 43.4% |
| COX1 | Protein-coding gene | 2,604 | 4,127 | 1,524 bp | + | 45.0% |
| ND4L | Protein-coding gene | 4,384 | 4,671 | 288 bp | + | 49.7% |
| tRNA-Gly | Transfer RNA | 4,677 | 4,739 | 63 bp | + | – |
| ND6 | Protein-coding gene | 4,774 | 5,271 | 498 bp | + | 45.4% |
| tRNA-Phe | Transfer RNA | 5,414 | 5,483 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 9,690 | 9,848 | 159 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 9,859 | 9,924 | 66 bp | + | – |
| CYTB | Protein-coding gene | 10,133 | 11,257 | 1,125 bp | + | 44.0% |
| tRNA-Asp | Transfer RNA | 11,256 | 11,321 | 66 bp | + | – |
| COX3 | Protein-coding gene | 11,401 | 12,171 | 771 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 12,215 | 12,283 | 69 bp | + | – |
| tRNA-Phe | Transfer RNA | 12,288 | 12,352 | 65 bp | + | – |
| tRNA-Gln | Transfer RNA | 12,359 | 12,425 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 12,429 | 12,497 | 69 bp | + | – |
| tRNA-Glu | Transfer RNA | 12,503 | 12,568 | 66 bp | + | – |
| ATP6 | Protein-coding gene | 12,642 | 13,313 | 672 bp | + | 43.2% |
| COX2 | Protein-coding gene | 13,377 | 14,078 | 702 bp | + | 45.3% |
| ND2 | Protein-coding gene | 14,084 | 15,040 | 957 bp | + | 43.8% |
| tRNA-Val | Transfer RNA | 15,051 | 15,116 | 66 bp | + | – |
| ND3 | Protein-coding gene | 15,125 | 15,472 | 348 bp | + | 45.1% |
| ND4 | Protein-coding gene | 15,552 | 16,835 | 1,284 bp | + | 45.2% |
| tRNA-His | Transfer RNA | 16,837 | 16,902 | 66 bp | + | – |
| tRNA-Trp | Transfer RNA | 16,908 | 16,977 | 70 bp | + | – |
| tRNA-Tyr | Transfer RNA | 16,981 | 17,045 | 65 bp | + | – |
| tRNA-Thr | Transfer RNA | 17,050 | 17,112 | 63 bp | + | – |
| tRNA-Pro | Transfer RNA | 17,116 | 17,183 | 68 bp | + | – |
| tRNA-Ile | Transfer RNA | 17,186 | 17,256 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 17,256 | 17,333 | 78 bp | + | – |
| tRNA-Met | Transfer RNA | 17,336 | 17,402 | 67 bp | + | – |
| tRNA-Met | Transfer RNA | 17,411 | 17,483 | 73 bp | + | – |
| tRNA-Cys | Transfer RNA | 17,492 | 17,559 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 17,571 | 17,638 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 17,675 | 18,638 | 964 bp | + | 47.3% |
| ND5 | Protein-coding gene | 18,690 | 20,393 | 1,704 bp | + | 44.1% |