Miniellus nubilus
Ozark minnow
GC content
45.63%
Whole genome
Non-coding
1,139 bp
D-loop 1,052 bp
Where Ozark minnow sits among 2,335 species
Whole-genome GC content against maximum lifespan. Ozark minnow has the 2,147th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,748 bp
- GC skew (G − C) / (G + C)
- −0.185
- AT skew (A − T) / (A + T)
- +0.008
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,748 bp
Protein-coding11,403 bp
12S rRNA958 bp
16S rRNA1,685 bp
All tRNA1,563 bp
D-loop1,052 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.05% | −0.217 | −0.170 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.77% | −0.272 | −0.048 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.10% | −0.152 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.196 | +0.043 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 36.97% | −0.443 | +0.115 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.81% | −0.322 | −0.070 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.68% | −0.180 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.85% | −0.263 | −0.048 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.43% | −0.256 | −0.095 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.88% | −0.233 | −0.094 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 45.32% | −0.243 | −0.042 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.336 | +0.309 | |||||
| CYTBCytochrome b | 1,141 bp | 44.79% | −0.245 | −0.086 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.00% | −0.069 | +0.236 | |||||
| 16S rRNA16S ribosomal RNA | 1,685 bp | 45.94% | −0.023 | +0.225 | |||||
| D-loopControl region (D-loop) | 1,052 bp | 37.31% | −0.171 | +0.005 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU110
UUC117
Leu L16.5%
UUA119
UUG37
CUU136
CUC120
CUA144
CUG71
Ile I6.9%
AUU173
AUC89
Met M4.7%
AUA96
AUG81
Val V6.4%
GUU67
GUC43
GUA97
GUG37
Ser S6.3%
UCU45
UCC56
UCA68
UCG16
AGU16
AGC39
Pro P5.7%
CCU60
CCC56
CCA83
CCG16
Thr T7.9%
ACU64
ACC116
ACA100
ACG19
Ala A9.4%
GCU71
GCC145
GCA102
GCG38
Tyr Y3.0%
UAU46
UAC67
His H2.8%
CAU34
CAC71
Gln Q2.5%
CAA59
CAG38
Asn N2.9%
AAU47
AAC63
Lys K2.0%
AAA45
AAG33
Asp D2.0%
GAU27
GAC49
Glu E2.6%
GAA63
GAG37
Cys C0.7%
UGU12
UGC14
Trp W3.2%
UGA86
UGG34
Arg R2.0%
CGU15
CGC10
CGA35
CGG18
Gly G6.5%
GGU41
GGC74
GGA78
GGG55
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_084096.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,784 | 1,685 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,785 | 2,860 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,862 | 3,836 | 975 bp | + | 50.1% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,909 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 51.8% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,408 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,478 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 44.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,178 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,185 | 7,875 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,876 | 7,951 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,117 | 165 bp | + | 37.0% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 41.8% |
| COX3 | Protein-coding gene | 8,794 | 9,577 | 784 bp | + | 46.7% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,649 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,650 | 9,998 | 349 bp | + | 45.9% |
| tRNA-Arg | Transfer RNA | 9,999 | 10,067 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,068 | 10,364 | 297 bp | + | 43.4% |
| ND4 | Protein-coding gene | 10,358 | 11,739 | 1,382 bp | + | 45.9% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,877 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,787 | 1,836 bp | + | 45.3% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 44.8% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,626 | 15,696 | 71 bp | − | – |
| D-loop | Control region | 15,697 | 16,748 | 1,052 bp | – | 37.3% |