Minytrema melanops
Spotted sucker
GC content
42.67%
Whole genome
Non-coding
1,016 bp
Including the D-loop
Where Spotted sucker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spotted sucker has the 1,901st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,627 bp
- GC skew (G − C) / (G + C)
- −0.216
- AT skew (A − T) / (A + T)
- +0.062
Life history
- Maximum lifespan
- 6 years
- Adult weight
- 676.5 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03882)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,627 bp
Protein-coding11,411 bp
12S rRNA950 bp
16S rRNA1,683 bp
All tRNA1,572 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.56% | −0.239 | −0.004 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 43.55% | −0.355 | +0.073 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 41.39% | −0.165 | −0.078 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 40.81% | −0.199 | +0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.420 | +0.212 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 36.84% | −0.286 | −0.032 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 43.77% | −0.267 | −0.005 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 39.60% | −0.281 | −0.028 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.274 | −0.037 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.29% | −0.284 | +0.026 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.00% | −0.326 | +0.030 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.391 | +0.412 | |||||
| CYTBCytochrome b | 1,141 bp | 44.96% | −0.290 | +0.010 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 48.53% | −0.063 | +0.211 | |||||
| 16S rRNA16S ribosomal RNA | 1,683 bp | 44.33% | −0.027 | +0.251 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU107
UUC121
Leu L16.2%
UUA144
UUG31
CUU101
CUC83
CUA236
CUG22
Ile I7.5%
AUU194
AUC91
Met M4.4%
AUA110
AUG59
Val V6.2%
GUU68
GUC29
GUA118
GUG22
Ser S6.3%
UCU45
UCC60
UCA74
UCG10
AGU17
AGC33
Pro P5.6%
CCU42
CCC51
CCA109
CCG10
Thr T7.7%
ACU51
ACC105
ACA133
ACG6
Ala A9.2%
GCU78
GCC133
GCA126
GCG15
Tyr Y3.1%
UAU59
UAC58
His H2.8%
CAU42
CAC64
Gln Q2.6%
CAA90
CAG9
Asn N3.1%
AAU56
AAC61
Lys K1.9%
AAA62
AAG12
Asp D2.0%
GAU29
GAC47
Glu E2.7%
GAA84
GAG20
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA101
UGG20
Arg R2.0%
CGU9
CGC9
CGA50
CGG8
Gly G6.6%
GGU38
GGC46
GGA127
GGG39
Stop 0.3%
UAA7
UAG3
AGA0
AGG0
Genome map
37 annotated features in NC_008113.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,774 | 1,683 bp | + | 44.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,775 | 2,851 | 77 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 42.6% |
| tRNA-Ile | Transfer RNA | 3,830 | 3,906 | 77 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,091 | 1,047 bp | + | 43.6% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,162 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,165 | 5,232 | 68 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,409 | 71 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,478 | 73 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 41.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,178 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,193 | 7,883 | 691 bp | + | 40.8% |
| tRNA-Lys | Transfer RNA | 7,884 | 7,959 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,961 | 8,128 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,119 | 8,802 | 684 bp | + | 36.8% |
| COX3 | Protein-coding gene | 8,802 | 9,587 | 786 bp | + | 43.8% |
| tRNA-Gly | Transfer RNA | 9,587 | 9,658 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,659 | 10,009 | 351 bp | + | 39.6% |
| tRNA-Arg | Transfer RNA | 10,008 | 10,077 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,078 | 10,374 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,368 | 11,748 | 1,381 bp | + | 42.3% |
| tRNA-His | Transfer RNA | 11,750 | 11,819 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,820 | 11,887 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,889 | 11,961 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,962 | 13,800 | 1,839 bp | + | 41.0% |
| ND6 | Protein-coding gene | 13,797 | 14,318 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,319 | 14,387 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 45.0% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,604 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,675 | 73 bp | − | – |