Moxostoma duquesnii

Black redhorse

Maximum lifespan

10 yr

AnAge record

mtDNA size

16,605 bp

RefSeq NC_084084.1

GC content

42.69%

Whole genome

Non-coding

1,005 bp

D-loop 911 bp

Where Black redhorse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black redhorse has the 1,596th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,605 bp

GC skew (G − C) / (G + C): −0.196
AT skew (A − T) / (A + T): +0.046

Life history

Maximum lifespan: 10 years
Adult weight: 1.3 kg
Female sexual maturity: 3 years
Male sexual maturity: 3 years

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03886)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,605 bp

Protein-coding11,407 bp

12S rRNA950 bp

16S rRNA1,681 bp

All tRNA1,562 bp

D-loop911 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Moxostoma duquesnii genes

ND1NADH dehydrogenase subunit 1	975 bp	28.0%	27.5%	16.7%	27.8%	44.51%	−0.249	+0.009
ND2NADH dehydrogenase subunit 2	1,045 bp	30.2%	27.2%	14.1%	28.5%	42.58%	−0.339	+0.053
COX1Cytochrome c oxidase subunit I	1,551 bp	26.7%	31.3%	17.7%	24.3%	42.04%	−0.156	−0.079
COX2Cytochrome c oxidase subunit II	691 bp	29.5%	29.1%	16.6%	24.7%	41.39%	−0.196	+0.007
ATP8ATP synthase F0 subunit 8	168 bp	33.3%	27.4%	13.1%	26.2%	39.29%	−0.333	+0.098
ATP6ATP synthase F0 subunit 6	684 bp	28.5%	31.6%	14.2%	25.7%	39.91%	−0.289	−0.051
COX3Cytochrome c oxidase subunit III	785 bp	26.5%	29.8%	18.1%	25.6%	43.69%	−0.172	−0.059
ND3NADH dehydrogenase subunit 3	349 bp	26.6%	31.2%	14.9%	27.2%	42.12%	−0.293	−0.079
ND4LNADH dehydrogenase subunit 4L	297 bp	24.6%	32.0%	17.2%	26.3%	43.43%	−0.209	−0.131
ND4NADH dehydrogenase subunit 4	1,382 bp	30.8%	29.2%	14.0%	26.0%	40.09%	−0.300	+0.027
ND5NADH dehydrogenase subunit 5	1,839 bp	29.8%	28.9%	14.7%	26.6%	41.27%	−0.289	+0.015
ND6NADH dehydrogenase subunit 6	522 bp	40.0%	15.1%	14.2%	30.7%	44.83%	−0.368	+0.451
CYTBCytochrome b	1,141 bp	26.2%	30.9%	16.6%	26.4%	42.95%	−0.229	−0.081
12S rRNA12S ribosomal RNA	950 bp	31.2%	20.5%	23.2%	25.2%	48.32%	−0.041	+0.206
16S rRNA16S ribosomal RNA	1,681 bp	34.7%	20.9%	21.5%	22.9%	44.38%	−0.032	+0.247
D-loopControl region (D-loop)	911 bp	32.9%	29.5%	16.0%	21.5%	37.54%	−0.146	+0.054

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU126

UUC97

Leu L16.4%

UUA159

UUG29

CUU130

CUC61

CUA196

CUG48

Ile I7.5%

AUU197

AUC87

Met M4.3%

AUA108

AUG55

Val V6.2%

GUU67

GUC35

GUA106

GUG27

Ser S6.5%

UCU59

UCC52

UCA71

UCG11

AGU13

AGC40

Pro P5.6%

CCU50

CCC60

CCA85

CCG18

Thr T7.7%

ACU59

ACC96

ACA127

ACG11

Ala A9.2%

GCU79

GCC136

GCA123

GCG13

Tyr Y3.0%

UAU61

UAC54

His H2.8%

CAU44

CAC63

Gln Q2.6%

CAA86

CAG13

Asn N3.2%

AAU58

AAC62

Lys K2.0%

AAA65

AAG12

Asp D2.0%

GAU32

GAC46

Glu E2.7%

GAA77

GAG27

Cys C0.7%

UGU10

UGC16

Trp W3.2%

UGA100

UGG21

Arg R2.0%

CGU9

CGC9

CGA46

CGG12

Gly G6.5%

GGU33

GGC41

GGA128

GGG44

Stop 0.2%

UAA7

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_084084.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Moxostoma duquesnii (NC_084084.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,019	950 bp	+	48.3%
tRNA-Val	Transfer RNA	1,020	1,091	72 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,772	1,681 bp	+	44.4%
tRNA-Leu (UUR)	Transfer RNA	2,773	2,847	75 bp	+	–
ND1	Protein-coding gene	2,849	3,823	975 bp	+	44.5%
tRNA-Ile	Transfer RNA	3,834	3,904	71 bp	+	–
tRNA-Gln	Transfer RNA	3,904	3,974	71 bp	−	–
tRNA-Met	Transfer RNA	3,976	4,044	69 bp	+	–
ND2	Protein-coding gene	4,045	5,089	1,045 bp	+	42.6%
tRNA-Trp	Transfer RNA	5,090	5,162	73 bp	+	–
tRNA-Ala	Transfer RNA	5,164	5,232	69 bp	−	–
tRNA-Asn	Transfer RNA	5,234	5,306	73 bp	−	–
tRNA-Cys	Transfer RNA	5,338	5,403	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,405	5,475	71 bp	−	–
COX1	Protein-coding gene	5,477	7,027	1,551 bp	+	42.0%
tRNA-Ser (UCN)	Transfer RNA	7,029	7,099	71 bp	−	–
tRNA-Asp	Transfer RNA	7,102	7,174	73 bp	+	–
COX2	Protein-coding gene	7,189	7,879	691 bp	+	41.4%
tRNA-Lys	Transfer RNA	7,880	7,955	76 bp	+	–
ATP8	Protein-coding gene	7,957	8,124	168 bp	+	39.3%
ATP6	Protein-coding gene	8,115	8,798	684 bp	+	39.9%
COX3	Protein-coding gene	8,798	9,582	785 bp	+	43.7%
tRNA-Gly	Transfer RNA	9,583	9,654	72 bp	+	–
ND3	Protein-coding gene	9,655	10,003	349 bp	+	42.1%
tRNA-Arg	Transfer RNA	10,004	10,073	70 bp	+	–
ND4L	Protein-coding gene	10,074	10,370	297 bp	+	43.4%
ND4	Protein-coding gene	10,364	11,745	1,382 bp	+	40.1%
tRNA-His	Transfer RNA	11,746	11,815	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,816	11,884	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,886	11,958	73 bp	+	–
ND5	Protein-coding gene	11,959	13,797	1,839 bp	+	41.3%
ND6	Protein-coding gene	13,794	14,315	522 bp	−	44.8%
tRNA-Glu	Transfer RNA	14,316	14,384	69 bp	−	–
CYTB	Protein-coding gene	14,389	15,529	1,141 bp	+	43.0%
tRNA-Thr	Transfer RNA	15,530	15,601	72 bp	+	–
tRNA-Pro	Transfer RNA	15,601	15,670	70 bp	−	–
D-loop	Control region	15,672	16,582	911 bp	–	37.5%