MitoAge

Mus musculus

House mouse

Add to compare Download FASTA
Maximum lifespan
4 yr
AnAge record
mtDNA size
16,299 bp
RefSeq NC_005089.1
GC content
36.75%
Whole genome
Non-coding
934 bp
D-loop 877 bp

Where House mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. House mouse has the 2,082nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %House mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,299 bp
GC skew (G − C) / (G + C)
−0.328
AT skew (A − T) / (A + T)
+0.092

Life history

Maximum lifespan
4 years
Adult weight
20.5 g
Birth weight
1.3 g
Basal metabolic rate
0.271 W
Body temperature
36.9 °C
Female sexual maturity
42 days
Male sexual maturity
42 days
Gestation or incubation
19 days
Litter or clutch size
7
Litters per year
5.4
Postnatal growth rate
0.0298 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03063)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,299 bp
Protein-coding11,338 bp
12S rRNA955 bp
16S rRNA1,582 bp
All tRNA1,497 bp
D-loop877 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp32.3%30.1%11.6%26.0%37.62%−0.383+0.035
ND2NADH dehydrogenase subunit 21,038 bp36.9%27.4%8.0%27.7%35.74%−0.553+0.148
COX1Cytochrome c oxidase subunit I1,545 bp29.5%30.6%16.1%23.8%39.87%−0.192−0.018
COX2Cytochrome c oxidase subunit II684 bp33.8%27.6%13.3%25.3%38.60%−0.311+0.100
ATP8ATP synthase F0 subunit 8204 bp40.7%27.5%5.9%26.0%31.86%−0.631+0.194
ATP6ATP synthase F0 subunit 6681 bp34.1%30.0%9.7%26.3%35.98%−0.461+0.064
COX3Cytochrome c oxidase subunit III784 bp29.8%31.3%13.8%25.1%38.90%−0.292−0.023
ND3NADH dehydrogenase subunit 3348 bp34.2%32.8%10.9%22.1%33.05%−0.339+0.021
ND4LNADH dehydrogenase subunit 4L297 bp30.0%29.0%11.1%30.0%41.08%−0.459+0.017
ND4NADH dehydrogenase subunit 41,378 bp34.8%29.5%9.8%25.8%35.63%−0.450+0.082
ND5NADH dehydrogenase subunit 51,824 bp34.3%28.6%10.0%27.1%37.12%−0.462+0.092
ND6NADH dehydrogenase subunit 6519 bp43.7%22.2%6.0%28.1%34.10%−0.650+0.327
CYTBCytochrome b1,144 bp31.7%29.2%12.2%26.9%39.07%−0.378+0.042
12S rRNA12S ribosomal RNA955 bp37.8%26.4%16.1%19.7%35.81%−0.099+0.178
16S rRNA16S ribosomal RNA1,582 bp38.2%26.4%16.2%19.2%35.40%−0.086+0.184
D-loopControl region (D-loop)877 bp33.9%29.3%11.9%25.0%36.83%−0.356+0.072

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU109
UUC133
Leu L15.5%
UUA129
UUG15
CUU87
CUC64
CUA266
CUG27
Ile I9.8%
AUU234
AUC139
Met M6.5%
AUA217
AUG30
Val V4.4%
GUU50
GUC33
GUA74
GUG11
Ser S7.6%
UCU42
UCC47
UCA147
UCG4
AGU14
AGC35
Pro P5.2%
CCU30
CCC34
CCA130
CCG2
Thr T8.1%
ACU59
ACC86
ACA157
ACG6
Ala A6.1%
GCU47
GCC83
GCA96
GCG7
Tyr Y3.3%
UAU65
UAC60
His H2.6%
CAU34
CAC63
Gln Q2.1%
CAA78
CAG3
Asn N4.4%
AAU60
AAC108
Lys K2.7%
AAA101
AAG2
Asp D1.9%
GAU31
GAC43
Glu E2.4%
GAA80
GAG11
Cys C0.7%
UGU10
UGC18
Trp W2.7%
UGA96
UGG7
Arg R1.7%
CGU8
CGC18
CGA35
CGG3
Gly G5.6%
GGU35
GGC39
GGA109
GGG29
Stop 0.3%
UAA8
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_005089.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA701,024955 bp+35.8%
tRNA-ValTransfer RNA1,0251,09369 bp+–
16S rRNARibosomal RNA1,0942,6751,582 bp+35.4%
tRNA-Leu (UUR)Transfer RNA2,6762,75075 bp+–
ND1Protein-coding gene2,7513,707957 bp+37.6%
tRNA-IleTransfer RNA3,7063,77469 bp+–
tRNA-GlnTransfer RNA3,7723,84271 bp−–
tRNA-MetTransfer RNA3,8453,91369 bp+–
ND2Protein-coding gene3,9144,9511,038 bp+35.7%
tRNA-TrpTransfer RNA4,9505,01667 bp+–
tRNA-AlaTransfer RNA5,0185,08669 bp−–
tRNA-AsnTransfer RNA5,0895,15971 bp−–
tRNA-CysTransfer RNA5,1925,25766 bp−–
tRNA-TyrTransfer RNA5,2605,32667 bp−–
COX1Protein-coding gene5,3286,8721,545 bp+39.9%
tRNA-Ser (UCN)Transfer RNA6,8706,93869 bp−–
tRNA-AspTransfer RNA6,9427,01170 bp+–
COX2Protein-coding gene7,0137,696684 bp+38.6%
tRNA-LysTransfer RNA7,7007,76465 bp+–
ATP8Protein-coding gene7,7667,969204 bp+31.9%
ATP6Protein-coding gene7,9278,607681 bp+36.0%
COX3Protein-coding gene8,6079,390784 bp+38.9%
tRNA-GlyTransfer RNA9,3919,45868 bp+–
ND3Protein-coding gene9,4599,806348 bp+33.1%
tRNA-ArgTransfer RNA9,8089,87568 bp+–
ND4LProtein-coding gene9,87710,173297 bp+41.1%
ND4Protein-coding gene10,16711,5441,378 bp+35.6%
tRNA-HisTransfer RNA11,54611,61267 bp+–
tRNA-Ser (AGY)Transfer RNA11,61311,67159 bp+–
tRNA-Leu (CUN)Transfer RNA11,67111,74171 bp+–
ND5Protein-coding gene11,74213,5651,824 bp+37.1%
ND6Protein-coding gene13,55214,070519 bp−34.1%
tRNA-GluTransfer RNA14,07114,13969 bp−–
CYTBProtein-coding gene14,14515,2881,144 bp+39.1%
tRNA-ThrTransfer RNA15,28915,35567 bp+–
tRNA-ProTransfer RNA15,35615,42267 bp−–
D-loopControl region15,42316,299877 bp–36.8%

Downloads