MitoAge

Mus spicilegus

Mound-building mouse

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Maximum lifespan
3.5 yr
AnAge record
mtDNA size
16,303 bp
RefSeq NC_085425.1
GC content
37.28%
Whole genome
Non-coding
946 bp
D-loop 878 bp

Where Mound-building mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Mound-building mouse has the 2,163rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Mound-building mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,303 bp
GC skew (G − C) / (G + C)
−0.327
AT skew (A − T) / (A + T)
+0.098

Life history

Maximum lifespan
3.5 years
Adult weight
19.9 g
Female sexual maturity
65 days
Male sexual maturity
42 days
Gestation or incubation
20 days
Litter or clutch size
6.7
Litters per year
4.5

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 03064)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,303 bp
Protein-coding11,334 bp
12S rRNA955 bp
16S rRNA1,585 bp
All tRNA1,486 bp
D-loop878 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp32.9%28.3%11.2%27.6%38.85%−0.423+0.075
ND2NADH dehydrogenase subunit 21,036 bp36.4%27.7%8.8%27.1%35.91%−0.511+0.136
COX1Cytochrome c oxidase subunit I1,545 bp29.6%30.4%15.8%24.1%39.94%−0.209−0.013
COX2Cytochrome c oxidase subunit II684 bp33.9%27.0%13.0%26.0%39.04%−0.333+0.113
ATP8ATP synthase F0 subunit 8204 bp40.2%27.9%6.4%25.5%31.86%−0.600+0.180
ATP6ATP synthase F0 subunit 6681 bp33.8%29.4%10.3%26.6%36.86%−0.442+0.070
COX3Cytochrome c oxidase subunit III784 bp30.2%29.5%14.0%26.3%40.31%−0.304+0.013
ND3NADH dehydrogenase subunit 3348 bp33.6%29.9%11.2%25.3%36.49%−0.386+0.059
ND4LNADH dehydrogenase subunit 4L297 bp30.3%32.0%10.1%27.6%37.71%−0.464−0.027
ND4NADH dehydrogenase subunit 41,378 bp34.3%29.7%10.3%25.8%36.07%−0.429+0.072
ND5NADH dehydrogenase subunit 51,824 bp34.9%28.0%9.9%27.2%37.12%−0.468+0.111
ND6NADH dehydrogenase subunit 6519 bp41.0%21.8%8.7%28.5%37.19%−0.534+0.307
CYTBCytochrome b1,144 bp31.9%28.7%12.5%26.9%39.42%−0.366+0.053
12S rRNA12S ribosomal RNA955 bp37.5%26.3%16.1%20.1%36.23%−0.110+0.176
16S rRNA16S ribosomal RNA1,585 bp37.9%26.1%16.4%19.7%36.09%−0.091+0.185
D-loopControl region (D-loop)878 bp33.8%29.0%11.6%25.5%37.13%−0.374+0.076

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU112
UUC126
Leu L15.5%
UUA114
UUG22
CUU87
CUC67
CUA271
CUG26
Ile I9.8%
AUU211
AUC160
Met M6.6%
AUA217
AUG33
Val V4.3%
GUU38
GUC37
GUA81
GUG8
Ser S7.7%
UCU36
UCC53
UCA147
UCG3
AGU17
AGC37
Pro P5.2%
CCU33
CCC31
CCA128
CCG4
Thr T8.3%
ACU64
ACC81
ACA164
ACG5
Ala A6.2%
GCU49
GCC83
GCA95
GCG8
Tyr Y3.4%
UAU56
UAC73
His H2.5%
CAU38
CAC58
Gln Q2.1%
CAA76
CAG5
Asn N4.3%
AAU50
AAC112
Lys K2.7%
AAA101
AAG3
Asp D1.9%
GAU25
GAC47
Glu E2.4%
GAA77
GAG15
Cys C0.7%
UGU12
UGC15
Trp W2.7%
UGA91
UGG12
Arg R1.7%
CGU7
CGC16
CGA41
CGG0
Gly G5.6%
GGU29
GGC42
GGA114
GGG27
Stop 0.2%
UAA8
UAG0
AGA0
AGG0

Genome map

38 annotated features in NC_085425.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16767 bp+–
12S rRNARibosomal RNA691,023955 bp+36.2%
tRNA-ValTransfer RNA1,0241,09269 bp+–
16S rRNARibosomal RNA1,0932,6771,585 bp+36.1%
tRNA-Leu (UUR)Transfer RNA2,6782,75275 bp+–
ND1Protein-coding gene2,7533,707955 bp+38.9%
tRNA-IleTransfer RNA3,7083,77669 bp+–
tRNA-GlnTransfer RNA3,7743,84471 bp−–
tRNA-MetTransfer RNA3,8583,91558 bp+–
ND2Protein-coding gene3,9164,9511,036 bp+35.9%
tRNA-TrpTransfer RNA4,9525,01867 bp+–
tRNA-AlaTransfer RNA5,0205,08869 bp−–
tRNA-AsnTransfer RNA5,0915,16171 bp−–
tRNA-CysTransfer RNA5,1945,26067 bp−–
tRNA-TyrTransfer RNA5,2635,32967 bp−–
COX1Protein-coding gene5,3316,8751,545 bp+39.9%
tRNA-Ser (UCN)Transfer RNA6,8736,94169 bp−–
tRNA-AspTransfer RNA6,9457,01369 bp+–
COX2Protein-coding gene7,0157,698684 bp+39.0%
tRNA-LysTransfer RNA7,7027,76665 bp+–
ATP8Protein-coding gene7,7687,971204 bp+31.9%
ATP6Protein-coding gene7,9298,609681 bp+36.9%
COX3Protein-coding gene8,6099,392784 bp+40.3%
tRNA-GlyTransfer RNA9,3939,46068 bp+–
ND3Protein-coding gene9,4619,808348 bp+36.5%
tRNA-ArgTransfer RNA9,8109,87768 bp+–
ND4LProtein-coding gene9,87910,175297 bp+37.7%
ND4Protein-coding gene10,16911,5461,378 bp+36.1%
tRNA-HisTransfer RNA11,54811,61467 bp+–
tRNA-Ser (AGY)Transfer RNA11,61511,67359 bp+–
tRNA-Leu (CUN)Transfer RNA11,67311,74371 bp+–
ND5Protein-coding gene11,74413,5671,824 bp+37.1%
ND6Protein-coding gene13,55414,072519 bp−37.2%
tRNA-GluTransfer RNA14,07314,14169 bp−–
CYTBProtein-coding gene14,14715,2901,144 bp+39.4%
tRNA-ThrTransfer RNA15,29115,35767 bp+–
tRNA-ProTransfer RNA15,35815,42568 bp−–
D-loopControl region15,42616,303878 bp–37.1%

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