Mylopharyngodon piceus
Black carp
GC content
43.45%
Whole genome
Non-coding
993 bp
D-loop 926 bp
Where Black carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Black carp has the 1,361st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,609 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.132
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,609 bp
Protein-coding11,404 bp
12S rRNA963 bp
16S rRNA1,691 bp
All tRNA1,558 bp
D-loop926 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.92% | −0.365 | +0.121 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.98% | −0.477 | +0.228 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.49% | −0.200 | −0.017 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.43% | −0.231 | +0.078 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 40.00% | −0.545 | +0.313 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.84% | −0.379 | +0.033 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.22% | −0.256 | +0.033 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.381 | +0.072 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.343 | +0.052 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.42% | −0.350 | +0.118 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.21% | −0.419 | +0.129 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.44% | −0.483 | +0.552 | |||||
| CYTBCytochrome b | 1,141 bp | 42.24% | −0.344 | +0.068 | |||||
| 12S rRNA12S ribosomal RNA | 963 bp | 49.64% | −0.092 | +0.237 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 42.11% | −0.065 | +0.291 | |||||
| D-loopControl region (D-loop) | 926 bp | 32.51% | −0.256 | +0.053 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU77
UUC148
Leu L16.2%
UUA71
UUG21
CUU95
CUC89
CUA295
CUG46
Ile I7.5%
AUU144
AUC143
Met M4.8%
AUA134
AUG49
Val V6.0%
GUU43
GUC46
GUA116
GUG22
Ser S6.3%
UCU35
UCC61
UCA81
UCG5
AGU10
AGC46
Pro P5.8%
CCU26
CCC60
CCA129
CCG6
Thr T8.2%
ACU44
ACC105
ACA151
ACG11
Ala A8.8%
GCU53
GCC141
GCA129
GCG10
Tyr Y3.0%
UAU41
UAC72
His H2.7%
CAU21
CAC82
Gln Q2.5%
CAA91
CAG6
Asn N3.2%
AAU36
AAC84
Lys K2.1%
AAA74
AAG5
Asp D2.0%
GAU14
GAC63
Glu E2.7%
GAA88
GAG15
Cys C0.7%
UGU8
UGC17
Trp W3.2%
UGA114
UGG7
Arg R2.0%
CGU14
CGC11
CGA50
CGG1
Gly G6.4%
GGU29
GGC39
GGA138
GGG36
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_011141.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,032 | 963 bp | + | 49.6% |
| tRNA-Val | Transfer RNA | 1,033 | 1,104 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,105 | 2,795 | 1,691 bp | + | 42.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,797 | 2,872 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,874 | 3,848 | 975 bp | + | 44.9% |
| tRNA-Ile | Transfer RNA | 3,853 | 3,924 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,923 | 3,993 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,995 | 4,063 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,064 | 5,108 | 1,045 bp | + | 45.0% |
| tRNA-Trp | Transfer RNA | 5,109 | 5,176 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,178 | 5,246 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,248 | 5,320 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,353 | 5,420 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,422 | 5,492 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,494 | 7,044 | 1,551 bp | + | 44.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,045 | 7,115 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,119 | 7,192 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,206 | 7,896 | 691 bp | + | 44.4% |
| tRNA-Lys | Transfer RNA | 7,897 | 7,972 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,974 | 8,138 | 165 bp | + | 40.0% |
| ATP6 | Protein-coding gene | 8,132 | 8,815 | 684 bp | + | 42.8% |
| COX3 | Protein-coding gene | 8,815 | 9,599 | 785 bp | + | 45.2% |
| tRNA-Gly | Transfer RNA | 9,600 | 9,671 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,672 | 10,020 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 10,021 | 10,090 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,091 | 10,387 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,381 | 11,762 | 1,382 bp | + | 43.4% |
| tRNA-His | Transfer RNA | 11,763 | 11,831 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,833 | 11,899 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,902 | 11,974 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,975 | 13,810 | 1,836 bp | + | 42.2% |
| ND6 | Protein-coding gene | 13,807 | 14,328 | 522 bp | − | 44.4% |
| tRNA-Glu | Transfer RNA | 14,329 | 14,397 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,402 | 15,542 | 1,141 bp | + | 42.2% |
| tRNA-Thr | Transfer RNA | 15,543 | 15,614 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,614 | 15,683 | 70 bp | − | – |
| D-loop | Control region | 15,684 | 16,609 | 926 bp | – | 32.5% |