Myoxocephalus jaok
Plain sculpin
GC content
46.32%
Whole genome
Non-coding
1,057 bp
D-loop 993 bp
Where Plain sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Plain sculpin has the 1,448th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,653 bp
- GC skew (G − C) / (G + C)
- −0.271
- AT skew (A − T) / (A + T)
- +0.009
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,653 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,693 bp
All tRNA1,551 bp
D-loop993 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.87% | −0.339 | −0.143 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.99% | −0.458 | −0.026 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.87% | −0.232 | −0.097 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.291 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.421 | +0.130 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.46% | −0.420 | −0.125 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.52% | −0.282 | −0.078 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.370 | −0.185 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.83% | −0.338 | −0.087 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.69% | −0.334 | −0.096 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.41% | −0.384 | −0.022 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.89% | −0.408 | +0.441 | |||||
| CYTBCytochrome b | 1,141 bp | 49.34% | −0.364 | −0.100 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.04% | −0.079 | +0.214 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.90% | −0.097 | +0.192 | |||||
| D-loopControl region (D-loop) | 993 bp | 38.17% | −0.087 | +0.033 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU116
UUC114
Leu L17.3%
UUA88
UUG24
CUU157
CUC185
CUA166
CUG40
Ile I7.0%
AUU141
AUC125
Met M3.9%
AUA82
AUG66
Val V6.0%
GUU76
GUC54
GUA66
GUG31
Ser S6.6%
UCU59
UCC75
UCA51
UCG5
AGU15
AGC45
Pro P5.7%
CCU70
CCC110
CCA31
CCG6
Thr T8.1%
ACU70
ACC133
ACA97
ACG8
Ala A9.3%
GCU79
GCC172
GCA97
GCG6
Tyr Y2.8%
UAU41
UAC67
His H2.8%
CAU38
CAC68
Gln Q2.6%
CAA80
CAG19
Asn N2.9%
AAU42
AAC69
Lys K1.9%
AAA66
AAG5
Asp D2.0%
GAU23
GAC52
Glu E2.6%
GAA83
GAG17
Cys C0.6%
UGU9
UGC15
Trp W3.2%
UGA96
UGG24
Arg R2.0%
CGU10
CGC23
CGA36
CGG9
Gly G6.5%
GGU29
GGC95
GGA68
GGG56
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_045875.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.0% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,778 | 1,693 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 46.9% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,901 | 3,971 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,039 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,040 | 5,085 | 1,046 bp | + | 48.0% |
| tRNA-Trp | Transfer RNA | 5,086 | 5,156 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,158 | 5,226 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,228 | 5,300 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,403 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,473 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,475 | 7,025 | 1,551 bp | + | 46.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,026 | 7,096 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,172 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,181 | 7,871 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,872 | 7,945 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,947 | 8,114 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,105 | 8,787 | 683 bp | + | 48.5% |
| COX3 | Protein-coding gene | 8,788 | 9,572 | 785 bp | + | 47.5% |
| tRNA-Gly | Transfer RNA | 9,573 | 9,645 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,646 | 9,994 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,995 | 10,063 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,064 | 10,360 | 297 bp | + | 49.8% |
| ND4 | Protein-coding gene | 10,354 | 11,734 | 1,381 bp | + | 45.7% |
| tRNA-His | Transfer RNA | 11,735 | 11,803 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,804 | 11,871 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,876 | 11,948 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,787 | 1,839 bp | + | 45.4% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 47.9% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 49.3% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,661 | 16,653 | 993 bp | – | 38.2% |