Myoxocephalus scorpius
Shorthorn sculpin
GC content
46.01%
Whole genome
Non-coding
1,029 bp
D-loop 966 bp
Where Shorthorn sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Shorthorn sculpin has the 1,038th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,626 bp
- GC skew (G − C) / (G + C)
- −0.268
- AT skew (A − T) / (A + T)
- +0.008
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,626 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,693 bp
All tRNA1,552 bp
D-loop966 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.05% | −0.359 | −0.122 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.28% | −0.469 | −0.017 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.07% | −0.225 | −0.099 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.299 | +0.016 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.410 | +0.133 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.425 | −0.104 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.75% | −0.275 | −0.072 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.368 | −0.180 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.311 | −0.110 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.11% | −0.319 | −0.098 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.19% | −0.374 | −0.020 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.83% | −0.393 | +0.375 | |||||
| CYTBCytochrome b | 1,141 bp | 48.29% | −0.368 | −0.102 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.57% | −0.076 | +0.218 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.90% | −0.102 | +0.199 | |||||
| D-loopControl region (D-loop) | 966 bp | 37.06% | −0.073 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU110
UUC121
Leu L17.3%
UUA92
UUG24
CUU171
CUC163
CUA168
CUG42
Ile I7.1%
AUU145
AUC124
Met M3.9%
AUA90
AUG58
Val V5.9%
GUU67
GUC55
GUA71
GUG30
Ser S6.5%
UCU63
UCC68
UCA53
UCG4
AGU17
AGC43
Pro P5.7%
CCU70
CCC110
CCA32
CCG5
Thr T8.2%
ACU71
ACC135
ACA93
ACG13
Ala A9.2%
GCU73
GCC173
GCA99
GCG7
Tyr Y2.8%
UAU38
UAC69
His H2.8%
CAU37
CAC69
Gln Q2.6%
CAA87
CAG12
Asn N2.9%
AAU38
AAC73
Lys K1.9%
AAA64
AAG7
Asp D2.0%
GAU24
GAC51
Glu E2.6%
GAA79
GAG21
Cys C0.6%
UGU14
UGC10
Trp W3.2%
UGA96
UGG24
Arg R2.0%
CGU9
CGC23
CGA37
CGG9
Gly G6.5%
GGU34
GGC88
GGA82
GGG45
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_042186.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.6% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,778 | 1,693 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 46.1% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,901 | 3,971 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,040 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,086 | 1,046 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,087 | 5,157 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,159 | 5,227 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,229 | 5,301 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,474 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,026 | 1,551 bp | + | 47.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,027 | 7,097 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,101 | 7,173 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,181 | 7,871 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,872 | 7,945 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,947 | 8,114 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,105 | 8,788 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,788 | 9,572 | 785 bp | + | 46.8% |
| tRNA-Gly | Transfer RNA | 9,573 | 9,645 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,646 | 9,994 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 9,995 | 10,063 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,064 | 10,360 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,354 | 11,734 | 1,381 bp | + | 45.1% |
| tRNA-His | Transfer RNA | 11,735 | 11,803 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,804 | 11,871 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,876 | 11,948 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,787 | 1,839 bp | + | 45.2% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 44.8% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 48.3% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,661 | 16,626 | 966 bp | – | 37.1% |