Mytilus galloprovincialis
Mediterranean mussel
GC content
38.24%
Whole genome
Non-coding
1,849 bp
D-loop 1,157 bp
Where Mediterranean mussel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mediterranean mussel has the 923rd longest lifespan of them.
- This species
- All other species
Base composition
Whole genome16,744 bp
- GC skew (G − C) / (G + C)
- +0.243
- AT skew (A − T) / (A + T)
- −0.110
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,744 bp
Protein-coding11,187 bp
12S rRNA947 bp
16S rRNA1,244 bp
All tRNA1,517 bp
D-loop1,157 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 916 bp | 40.28% | +0.257 | −0.250 | |||||
| ND2NADH dehydrogenase subunit 2 | 948 bp | 40.82% | +0.323 | −0.066 | |||||
| COX1Cytochrome c oxidase subunit I | 1,665 bp | 39.46% | +0.215 | −0.117 | |||||
| COX2Cytochrome c oxidase subunit II | 729 bp | 39.10% | +0.228 | −0.117 | |||||
| ATP6ATP synthase F0 subunit 6 | 717 bp | 38.35% | +0.265 | −0.258 | |||||
| COX3Cytochrome c oxidase subunit III | 793 bp | 42.12% | +0.222 | −0.229 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 40.74% | +0.371 | −0.288 | |||||
| ND4LNADH dehydrogenase subunit 4L | 282 bp | 35.82% | +0.287 | −0.227 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,308 bp | 40.52% | +0.268 | −0.134 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,705 bp | 37.83% | +0.216 | −0.143 | |||||
| ND6NADH dehydrogenase subunit 6 | 465 bp | 35.27% | +0.488 | −0.223 | |||||
| CYTBCytochrome b | 1,308 bp | 39.60% | +0.124 | −0.185 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 35.80% | +0.263 | +0.016 | |||||
| 16S rRNA16S ribosomal RNA | 1,244 bp | 34.41% | +0.229 | −0.022 | |||||
| D-loopControl region (D-loop) | 1,157 bp | 39.76% | +0.270 | +0.062 |
Codon usage
Counts per codon, darker is more frequent3,728 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F7.8%
UUU216
UUC76
Leu L14.1%
UUA186
UUG108
CUU69
CUC18
CUA95
CUG50
Ile I5.4%
AUU150
AUC52
Met M6.0%
AUA145
AUG79
Val V10.4%
GUU92
GUC30
GUA136
GUG130
Ser S10.5%
UCU72
UCC11
UCA32
UCG29
AGU57
AGC27
AGA87
AGG77
Pro P3.6%
CCU70
CCC14
CCA25
CCG26
Thr T3.2%
ACU57
ACC13
ACA37
ACG14
Ala A5.1%
GCU78
GCC23
GCA69
GCG20
Tyr Y4.1%
UAU97
UAC56
His H1.9%
CAU47
CAC24
Gln Q1.5%
CAA37
CAG19
Asn N3.0%
AAU69
AAC44
Lys K3.1%
AAA73
AAG43
Asp D1.8%
GAU37
GAC31
Glu E2.8%
GAA48
GAG56
Cys C2.1%
UGU50
UGC27
Trp W2.6%
UGA43
UGG55
Arg R2.3%
CGU28
CGC13
CGA25
CGG19
Gly G8.3%
GGU65
GGC36
GGA66
GGG141
Stop 0.2%
UAA5
UAG4
Genome map
38 annotated features in NC_006886.2Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding12
- rRNA2
- tRNA23
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| D-loop | Control region | 1 | 1,157 | 1,157 bp | – | 39.8% |
| tRNA-Tyr | Transfer RNA | 1,158 | 1,224 | 67 bp | + | – |
| CYTB | Protein-coding gene | 1,226 | 2,533 | 1,308 bp | + | 39.6% |
| COX2 | Protein-coding gene | 2,536 | 3,264 | 729 bp | + | 39.1% |
| tRNA-Lys | Transfer RNA | 3,268 | 3,336 | 69 bp | + | – |
| tRNA-Met | Transfer RNA | 3,340 | 3,408 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 3,412 | 3,477 | 66 bp | + | – |
| tRNA-Leu (UUR) | Transfer RNA | 3,481 | 3,546 | 66 bp | + | – |
| ND1 | Protein-coding gene | 3,709 | 4,624 | 916 bp | + | 40.3% |
| tRNA-Val | Transfer RNA | 4,626 | 4,691 | 66 bp | + | – |
| ND4 | Protein-coding gene | 4,692 | 5,999 | 1,308 bp | + | 40.5% |
| COX3 | Protein-coding gene | 6,003 | 6,795 | 793 bp | + | 42.1% |
| tRNA-Ser (UCN) | Transfer RNA | 6,954 | 7,016 | 63 bp | + | – |
| tRNA-Met | Transfer RNA | 7,018 | 7,082 | 65 bp | + | – |
| ND2 | Protein-coding gene | 7,086 | 8,033 | 948 bp | + | 40.8% |
| tRNA-Arg | Transfer RNA | 8,037 | 8,101 | 65 bp | + | – |
| tRNA-Trp | Transfer RNA | 8,105 | 8,172 | 68 bp | + | – |
| tRNA-Ala | Transfer RNA | 8,174 | 8,237 | 64 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 8,242 | 8,307 | 66 bp | + | – |
| tRNA-His | Transfer RNA | 8,310 | 8,373 | 64 bp | + | – |
| tRNA-Pro | Transfer RNA | 8,375 | 8,439 | 65 bp | + | – |
| ND3 | Protein-coding gene | 8,442 | 8,792 | 351 bp | + | 40.7% |
| COX1 | Protein-coding gene | 9,068 | 10,732 | 1,665 bp | + | 39.5% |
| ATP6 | Protein-coding gene | 10,742 | 11,458 | 717 bp | + | 38.4% |
| tRNA-Thr | Transfer RNA | 11,463 | 11,525 | 63 bp | + | – |
| ND4L | Protein-coding gene | 11,526 | 11,807 | 282 bp | + | 35.8% |
| ND5 | Protein-coding gene | 11,818 | 13,522 | 1,705 bp | + | 37.8% |
| ND6 | Protein-coding gene | 13,524 | 13,988 | 465 bp | + | 35.3% |
| tRNA-Phe | Transfer RNA | 14,002 | 14,069 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 14,070 | 15,016 | 947 bp | + | 35.8% |
| tRNA-Gly | Transfer RNA | 15,017 | 15,082 | 66 bp | + | – |
| tRNA-Asn | Transfer RNA | 15,083 | 15,147 | 65 bp | + | – |
| tRNA-Glu | Transfer RNA | 15,148 | 15,212 | 65 bp | + | – |
| tRNA-Cys | Transfer RNA | 15,214 | 15,281 | 68 bp | + | – |
| tRNA-Ile | Transfer RNA | 15,282 | 15,348 | 67 bp | + | – |
| tRNA-Gln | Transfer RNA | 15,364 | 15,430 | 67 bp | + | – |
| tRNA-Asp | Transfer RNA | 15,436 | 15,500 | 65 bp | + | – |
| 16S rRNA | Ribosomal RNA | 15,501 | 16,744 | 1,244 bp | + | 34.4% |