MitoAge

Nandinia binotata

African palm civet

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Maximum lifespan
21 yr
AnAge record
mtDNA size
17,103 bp
RefSeq NC_024567.1
GC content
40.28%
Whole genome
Non-coding
1,720 bp
D-loop 1,654 bp

Where African palm civet sits among 2,335 species

Whole-genome GC content against maximum lifespan. African palm civet has the 841st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %African palm civet
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,103 bp
GC skew (G − C) / (G + C)
−0.356
AT skew (A − T) / (A + T)
+0.125

Life history

Maximum lifespan
21 years
Adult weight
1.9 kg
Birth weight
55 g
Basal metabolic rate
5.565 W
Body temperature
37.4 °C
Female sexual maturity
3 years
Male sexual maturity
3 years
Gestation or incubation
64 days
Litter or clutch size
2
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02206)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,103 bp
Protein-coding11,339 bp
12S rRNA960 bp
16S rRNA1,577 bp
All tRNA1,513 bp
D-loop1,654 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.9%24.5%10.8%32.8%43.62%−0.506+0.132
ND2NADH dehydrogenase subunit 21,042 bp36.9%24.5%8.4%30.2%38.68%−0.563+0.202
COX1Cytochrome c oxidase subunit I1,545 bp28.7%30.3%15.9%25.1%40.97%−0.226−0.026
COX2Cytochrome c oxidase subunit II684 bp35.1%27.5%12.1%25.3%37.43%−0.352+0.122
ATP8ATP synthase F0 subunit 8204 bp41.7%27.0%5.9%25.5%31.37%−0.625+0.214
ATP6ATP synthase F0 subunit 6681 bp31.9%27.6%10.1%30.4%40.53%−0.500+0.072
COX3Cytochrome c oxidase subunit III784 bp27.9%27.7%14.4%30.0%44.39%−0.351+0.005
ND3NADH dehydrogenase subunit 3347 bp33.4%25.1%10.7%30.8%41.50%−0.486+0.143
ND4LNADH dehydrogenase subunit 4L297 bp30.0%32.0%11.1%26.9%38.05%−0.416−0.033
ND4NADH dehydrogenase subunit 41,378 bp33.5%26.7%11.0%28.9%39.84%−0.450+0.112
ND5NADH dehydrogenase subunit 51,819 bp33.6%27.4%10.7%28.3%38.98%−0.453+0.103
ND6NADH dehydrogenase subunit 6528 bp41.1%20.5%8.5%29.9%38.45%−0.557+0.335
CYTBCytochrome b1,140 bp29.5%25.8%12.7%32.0%44.74%−0.431+0.067
12S rRNA12S ribosomal RNA960 bp36.6%21.4%17.6%24.5%42.08%−0.163+0.263
16S rRNA16S ribosomal RNA1,577 bp38.1%22.4%16.6%22.8%39.44%−0.158+0.259
D-loopControl region (D-loop)1,654 bp31.6%25.6%14.4%27.4%42.19%−0.311+0.105

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU83
UUC151
Leu L15.7%
UUA113
UUG17
CUU48
CUC90
CUA312
CUG18
Ile I9.0%
AUU149
AUC193
Met M6.4%
AUA211
AUG34
Val V4.5%
GUU25
GUC39
GUA93
GUG14
Ser S7.3%
UCU37
UCC82
UCA104
UCG4
AGU9
AGC40
Pro P5.1%
CCU33
CCC90
CCA70
CCG1
Thr T8.3%
ACU54
ACC97
ACA145
ACG19
Ala A6.8%
GCU51
GCC107
GCA98
GCG4
Tyr Y3.7%
UAU58
UAC82
His H2.5%
CAU29
CAC67
Gln Q2.5%
CAA86
CAG9
Asn N4.1%
AAU53
AAC104
Lys K2.6%
AAA90
AAG7
Asp D1.7%
GAU23
GAC42
Glu E2.6%
GAA83
GAG16
Cys C0.6%
UGU8
UGC15
Trp W2.8%
UGA100
UGG5
Arg R1.7%
CGU5
CGC14
CGA46
CGG0
Gly G5.7%
GGU38
GGC67
GGA95
GGG15
Stop 0.2%
UAA6
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_024567.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,029960 bp+42.1%
tRNA-ValTransfer RNA1,0301,09970 bp+–
16S rRNARibosomal RNA1,0982,6741,577 bp+39.4%
tRNA-Leu (UUR)Transfer RNA2,6752,74975 bp+–
ND1Protein-coding gene2,7523,707956 bp+43.6%
tRNA-IleTransfer RNA3,7083,77669 bp+–
tRNA-GlnTransfer RNA3,7743,84673 bp−–
tRNA-MetTransfer RNA3,8483,91770 bp+–
ND2Protein-coding gene3,9184,9591,042 bp+38.7%
tRNA-TrpTransfer RNA4,9605,02768 bp+–
tRNA-AlaTransfer RNA5,0425,11069 bp−–
tRNA-AsnTransfer RNA5,1125,18473 bp−–
tRNA-CysTransfer RNA5,2185,28467 bp−–
tRNA-TyrTransfer RNA5,2855,35167 bp−–
COX1Protein-coding gene5,3536,8971,545 bp+41.0%
tRNA-Ser (UCN)Transfer RNA6,8966,96267 bp−–
tRNA-AspTransfer RNA6,9707,03768 bp+–
COX2Protein-coding gene7,0387,721684 bp+37.4%
tRNA-LysTransfer RNA7,7257,79268 bp+–
ATP8Protein-coding gene7,7947,997204 bp+31.4%
ATP6Protein-coding gene7,9558,635681 bp+40.5%
COX3Protein-coding gene8,6359,418784 bp+44.4%
tRNA-GlyTransfer RNA9,4199,48769 bp+–
ND3Protein-coding gene9,4889,834347 bp+41.5%
tRNA-ArgTransfer RNA9,8359,90369 bp+–
ND4LProtein-coding gene9,90410,200297 bp+38.1%
ND4Protein-coding gene10,19411,5711,378 bp+39.8%
tRNA-HisTransfer RNA11,57211,64069 bp+–
tRNA-Ser (AGY)Transfer RNA11,64111,69959 bp+–
tRNA-Leu (CUN)Transfer RNA11,70011,77172 bp+–
ND5Protein-coding gene11,77013,5881,819 bp+39.0%
ND6Protein-coding gene13,57414,101528 bp−38.5%
tRNA-GluTransfer RNA14,10214,17069 bp−–
CYTBProtein-coding gene14,17415,3131,140 bp+44.7%
tRNA-ThrTransfer RNA15,31415,38269 bp+–
tRNA-ProTransfer RNA15,38315,44967 bp−–
D-loopControl region15,45017,1031,654 bp–42.2%

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