Nematalosa erebi
Australian river gizzard shad
GC content
47.63%
Whole genome
Non-coding
1,076 bp
D-loop 1,005 bp
Where Australian river gizzard shad sits among 2,335 species
Whole-genome GC content against maximum lifespan. Australian river gizzard shad has the 1,604th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,665 bp
- GC skew (G − C) / (G + C)
- −0.217
- AT skew (A − T) / (A + T)
- +0.048
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,665 bp
Protein-coding11,403 bp
12S rRNA949 bp
16S rRNA1,687 bp
All tRNA1,550 bp
D-loop1,005 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.74% | −0.299 | −0.094 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 49.00% | −0.367 | +0.062 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.39% | −0.136 | −0.077 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.76% | −0.248 | +0.064 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.378 | +0.128 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 46.27% | −0.342 | +0.008 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.70% | −0.251 | −0.075 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.00% | −0.236 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.293 | −0.061 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.260 | 0.000 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 46.57% | −0.296 | +0.023 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.311 | +0.439 | |||||
| CYTBCytochrome b | 1,141 bp | 47.42% | −0.246 | −0.090 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 50.69% | −0.069 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,687 bp | 48.73% | −0.092 | +0.267 | |||||
| D-loopControl region (D-loop) | 1,005 bp | 42.59% | −0.159 | +0.078 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU96
UUC133
Leu L16.5%
UUA81
UUG35
CUU128
CUC109
CUA185
CUG89
Ile I7.2%
AUU142
AUC132
Met M4.1%
AUA65
AUG92
Val V6.2%
GUU54
GUC59
GUA85
GUG37
Ser S6.2%
UCU37
UCC68
UCA55
UCG20
AGU14
AGC42
Pro P5.8%
CCU56
CCC77
CCA67
CCG21
Thr T8.1%
ACU58
ACC123
ACA99
ACG27
Ala A9.5%
GCU51
GCC170
GCA112
GCG30
Tyr Y3.0%
UAU32
UAC82
His H2.8%
CAU25
CAC80
Gln Q2.5%
CAA74
CAG21
Asn N2.9%
AAU38
AAC72
Lys K2.0%
AAA61
AAG16
Asp D2.0%
GAU24
GAC53
Glu E2.7%
GAA70
GAG32
Cys C0.8%
UGU9
UGC20
Trp W3.1%
UGA89
UGG29
Arg R2.0%
CGU6
CGC15
CGA45
CGG11
Gly G6.5%
GGU36
GGC55
GGA106
GGG49
Stop 0.2%
UAA4
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_043853.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 50.7% |
| tRNA-Val | Transfer RNA | 1,018 | 1,089 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,090 | 2,776 | 1,687 bp | + | 48.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,777 | 2,851 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 49.7% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,906 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,089 | 1,045 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,161 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 45.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,174 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 47.8% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,111 | 8,793 | 683 bp | + | 46.3% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 50.7% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 51.0% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,069 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,360 | 11,740 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,741 | 11,809 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,810 | 11,876 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,948 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,784 | 1,836 bp | + | 46.6% |
| ND6 | Protein-coding gene | 13,781 | 14,302 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 47.4% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |
| D-loop | Control region | 15,661 | 16,665 | 1,005 bp | – | 42.6% |