Nemipterus bathybius
Yellowbelly threadfin bream
GC content
42.67%
Whole genome
Non-coding
1,669 bp
D-loop 1,603 bp
Where Yellowbelly threadfin bream sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellowbelly threadfin bream has the 1,608th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,353 bp
- GC skew (G − C) / (G + C)
- −0.229
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,353 bp
Protein-coding11,407 bp
12S rRNA995 bp
16S rRNA1,732 bp
All tRNA1,550 bp
D-loop1,603 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.10% | −0.340 | −0.072 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 45.12% | −0.403 | −0.017 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.71% | −0.159 | −0.120 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.98% | −0.259 | −0.015 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.493 | +0.052 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.35% | −0.356 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.12% | −0.271 | −0.012 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.13% | −0.304 | −0.096 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.315 | −0.108 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.03% | −0.270 | −0.092 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.80% | −0.342 | +0.021 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.30% | −0.389 | +0.412 | |||||
| CYTBCytochrome b | 1,141 bp | 45.40% | −0.293 | −0.111 | |||||
| 12S rRNA12S ribosomal RNA | 995 bp | 47.64% | −0.076 | +0.167 | |||||
| 16S rRNA16S ribosomal RNA | 1,732 bp | 42.09% | −0.078 | +0.161 | |||||
| D-loopControl region (D-loop) | 1,603 bp | 27.01% | +0.016 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU100
UUC137
Leu L16.2%
UUA117
UUG28
CUU142
CUC130
CUA152
CUG48
Ile I7.3%
AUU176
AUC102
Met M4.6%
AUA112
AUG62
Val V6.6%
GUU81
GUC67
GUA80
GUG22
Ser S6.5%
UCU69
UCC56
UCA58
UCG7
AGU16
AGC40
Pro P5.7%
CCU83
CCC63
CCA57
CCG15
Thr T7.4%
ACU61
ACC98
ACA114
ACG9
Ala A9.1%
GCU80
GCC126
GCA123
GCG19
Tyr Y3.1%
UAU44
UAC74
His H2.7%
CAU31
CAC73
Gln Q2.6%
CAA93
CAG6
Asn N3.0%
AAU44
AAC70
Lys K1.9%
AAA62
AAG12
Asp D2.0%
GAU24
GAC51
Glu E2.5%
GAA77
GAG18
Cys C0.8%
UGU10
UGC21
Trp W3.1%
UGA102
UGG15
Arg R2.1%
CGU11
CGC11
CGA50
CGG8
Gly G6.4%
GGU24
GGC88
GGA81
GGG50
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_029938.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,066 | 995 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,067 | 1,138 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,139 | 2,870 | 1,732 bp | + | 42.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,871 | 2,944 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,945 | 3,919 | 975 bp | + | 44.1% |
| tRNA-Ile | Transfer RNA | 3,924 | 3,993 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,993 | 4,063 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,063 | 4,132 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,133 | 5,178 | 1,046 bp | + | 45.1% |
| tRNA-Trp | Transfer RNA | 5,179 | 5,249 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,250 | 5,318 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,320 | 5,392 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,435 | 5,500 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,501 | 5,571 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,573 | 7,123 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,125 | 7,195 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,198 | 7,268 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,276 | 7,966 | 691 bp | + | 43.0% |
| tRNA-Lys | Transfer RNA | 7,967 | 8,041 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,043 | 8,210 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,201 | 8,884 | 684 bp | + | 46.4% |
| COX3 | Protein-coding gene | 8,884 | 9,668 | 785 bp | + | 46.1% |
| tRNA-Gly | Transfer RNA | 9,669 | 9,739 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,740 | 10,088 | 349 bp | + | 46.1% |
| tRNA-Arg | Transfer RNA | 10,089 | 10,157 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,158 | 10,454 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,448 | 11,828 | 1,381 bp | + | 44.0% |
| tRNA-His | Transfer RNA | 11,829 | 11,897 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,898 | 11,964 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,967 | 12,039 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,040 | 13,878 | 1,839 bp | + | 42.8% |
| ND6 | Protein-coding gene | 13,875 | 14,396 | 522 bp | − | 43.3% |
| tRNA-Glu | Transfer RNA | 14,398 | 14,466 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,471 | 15,611 | 1,141 bp | + | 45.4% |
| tRNA-Thr | Transfer RNA | 15,612 | 15,682 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,682 | 15,750 | 69 bp | − | – |
| D-loop | Control region | 15,751 | 17,353 | 1,603 bp | – | 27.0% |