Nemipterus japonicus

Japanese threadfin-bream

Maximum lifespan

8 yr

AnAge record

mtDNA size

16,995 bp

RefSeq NC_023972.1

GC content

43.04%

Whole genome

Non-coding

1,387 bp

D-loop 1,260 bp

Where Japanese threadfin-bream sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese threadfin-bream has the 1,726th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,995 bp

GC skew (G − C) / (G + C): −0.236
AT skew (A − T) / (A + T): +0.020

Life history

Maximum lifespan: 8 years
Adult weight: 327.8 g
Female sexual maturity: 365 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04251)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,995 bp

Protein-coding11,407 bp

12S rRNA939 bp

16S rRNA1,713 bp

All tRNA1,549 bp

D-loop1,260 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Nemipterus japonicus genes

ND1NADH dehydrogenase subunit 1	975 bp	25.0%	30.3%	15.5%	29.2%	44.72%	−0.307	−0.095
ND2NADH dehydrogenase subunit 2	1,049 bp	29.1%	27.5%	12.7%	30.8%	43.47%	−0.417	+0.029
COX1Cytochrome c oxidase subunit I	1,551 bp	25.5%	30.9%	18.2%	25.5%	43.65%	−0.167	−0.096
COX2Cytochrome c oxidase subunit II	691 bp	28.5%	29.1%	15.9%	26.5%	42.40%	−0.249	−0.010
ATP8ATP synthase F0 subunit 8	168 bp	29.2%	26.2%	13.1%	31.5%	44.64%	−0.413	+0.054
ATP6ATP synthase F0 subunit 6	684 bp	27.2%	29.1%	13.7%	30.0%	43.71%	−0.371	−0.034
COX3Cytochrome c oxidase subunit III	785 bp	26.1%	28.0%	17.8%	28.0%	45.86%	−0.222	−0.035
ND3NADH dehydrogenase subunit 3	349 bp	24.4%	31.8%	16.0%	27.8%	43.84%	−0.268	−0.133
ND4LNADH dehydrogenase subunit 4L	297 bp	23.6%	27.6%	16.8%	32.0%	48.82%	−0.310	−0.079
ND4NADH dehydrogenase subunit 4	1,378 bp	26.1%	30.3%	15.5%	28.1%	43.61%	−0.288	−0.076
ND5NADH dehydrogenase subunit 5	1,839 bp	29.4%	29.1%	13.5%	27.9%	41.44%	−0.349	+0.005
ND6NADH dehydrogenase subunit 6	522 bp	38.7%	17.6%	13.4%	30.3%	43.68%	−0.386	+0.374
CYTBCytochrome b	1,141 bp	25.4%	29.4%	15.7%	29.4%	45.14%	−0.305	−0.073
12S rRNA12S ribosomal RNA	939 bp	29.4%	21.5%	22.4%	26.7%	49.10%	−0.089	+0.155
16S rRNA16S ribosomal RNA	1,713 bp	33.9%	23.5%	19.1%	23.5%	42.62%	−0.104	+0.182
D-loopControl region (D-loop)	1,260 bp	35.2%	32.8%	14.7%	17.3%	31.98%	−0.082	+0.036

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU102

UUC127

Leu L16.5%

UUA138

UUG20

CUU134

CUC131

CUA162

CUG42

Ile I7.4%

AUU187

AUC93

Met M4.6%

AUA122

AUG55

Val V6.2%

GUU79

GUC50

GUA89

GUG19

Ser S6.2%

UCU61

UCC58

UCA54

UCG8

AGU17

AGC37

Pro P5.7%

CCU65

CCC82

CCA60

CCG11

Thr T7.5%

ACU61

ACC100

ACA112

ACG13

Ala A9.1%

GCU88

GCC112

GCA128

GCG18

Tyr Y3.3%

UAU52

UAC73

His H2.8%

CAU31

CAC75

Gln Q2.5%

CAA89

CAG8

Asn N2.9%

AAU46

AAC66

Lys K1.9%

AAA62

AAG12

Asp D2.0%

GAU29

GAC49

Glu E2.5%

GAA77

GAG19

Cys C0.8%

UGU18

UGC14

Trp W3.1%

UGA106

UGG13

Arg R2.1%

CGU9

CGC11

CGA46

CGG13

Gly G6.5%

GGU25

GGC85

GGA87

GGG50

Stop 0.2%

UAA6

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_023972.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Nemipterus japonicus (NC_023972.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	71	71 bp	+	–
12S rRNA	Ribosomal RNA	73	1,011	939 bp	+	49.1%
tRNA-Val	Transfer RNA	1,049	1,120	72 bp	+	–
16S rRNA	Ribosomal RNA	1,121	2,833	1,713 bp	+	42.6%
tRNA-Leu (UUR)	Transfer RNA	2,856	2,929	74 bp	+	–
ND1	Protein-coding gene	2,930	3,904	975 bp	+	44.7%
tRNA-Ile	Transfer RNA	3,909	3,977	69 bp	+	–
tRNA-Gln	Transfer RNA	3,977	4,047	71 bp	−	–
tRNA-Met	Transfer RNA	4,047	4,116	70 bp	+	–
ND2	Protein-coding gene	4,117	5,165	1,049 bp	+	43.5%
tRNA-Trp	Transfer RNA	5,166	5,236	71 bp	+	–
tRNA-Ala	Transfer RNA	5,237	5,305	69 bp	−	–
tRNA-Asn	Transfer RNA	5,307	5,379	73 bp	−	–
tRNA-Cys	Transfer RNA	5,423	5,488	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,489	5,559	71 bp	−	–
COX1	Protein-coding gene	5,561	7,111	1,551 bp	+	43.7%
tRNA-Ser (UCN)	Transfer RNA	7,113	7,183	71 bp	−	–
tRNA-Asp	Transfer RNA	7,186	7,256	71 bp	+	–
COX2	Protein-coding gene	7,264	7,954	691 bp	+	42.4%
tRNA-Lys	Transfer RNA	7,955	8,029	75 bp	+	–
ATP8	Protein-coding gene	8,031	8,198	168 bp	+	44.6%
ATP6	Protein-coding gene	8,189	8,872	684 bp	+	43.7%
COX3	Protein-coding gene	8,872	9,656	785 bp	+	45.9%
tRNA-Gly	Transfer RNA	9,657	9,727	71 bp	+	–
ND3	Protein-coding gene	9,728	10,076	349 bp	+	43.8%
tRNA-Arg	Transfer RNA	10,077	10,145	69 bp	+	–
ND4L	Protein-coding gene	10,146	10,442	297 bp	+	48.8%
ND4	Protein-coding gene	10,436	11,813	1,378 bp	+	43.6%
tRNA-His	Transfer RNA	11,814	11,882	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,883	11,949	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,952	12,024	73 bp	+	–
ND5	Protein-coding gene	12,025	13,863	1,839 bp	+	41.4%
ND6	Protein-coding gene	13,860	14,381	522 bp	−	43.7%
tRNA-Glu	Transfer RNA	14,383	14,451	69 bp	−	–
CYTB	Protein-coding gene	14,456	15,596	1,141 bp	+	45.1%
tRNA-Thr	Transfer RNA	15,597	15,667	71 bp	+	–
tRNA-Pro	Transfer RNA	15,667	15,735	69 bp	−	–
D-loop	Control region	15,736	16,995	1,260 bp	–	32.0%