Nemipterus virgatus
Golden threadfin bream
GC content
43.06%
Whole genome
Non-coding
1,327 bp
D-loop 1,260 bp
Where Golden threadfin bream sits among 2,335 species
Whole-genome GC content against maximum lifespan. Golden threadfin bream has the 2,137th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,992 bp
- GC skew (G − C) / (G + C)
- −0.236
- AT skew (A − T) / (A + T)
- +0.020
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,992 bp
Protein-coding11,404 bp
12S rRNA977 bp
16S rRNA1,735 bp
All tRNA1,549 bp
D-loop1,260 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.72% | −0.307 | −0.095 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 43.50% | −0.415 | +0.025 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.65% | −0.167 | −0.096 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.40% | −0.249 | −0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.421 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.92% | −0.367 | −0.039 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.73% | −0.220 | −0.038 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.268 | −0.133 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.310 | −0.079 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 43.61% | −0.288 | −0.076 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 41.44% | −0.349 | +0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.386 | +0.374 | |||||
| CYTBCytochrome b | 1,141 bp | 45.14% | −0.313 | −0.073 | |||||
| 12S rRNA12S ribosomal RNA | 977 bp | 48.52% | −0.076 | +0.153 | |||||
| 16S rRNA16S ribosomal RNA | 1,735 bp | 42.54% | −0.103 | +0.184 | |||||
| D-loopControl region (D-loop) | 1,260 bp | 32.06% | −0.084 | +0.037 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU102
UUC127
Leu L16.5%
UUA138
UUG20
CUU134
CUC131
CUA162
CUG43
Ile I7.4%
AUU189
AUC91
Met M4.6%
AUA122
AUG54
Val V6.2%
GUU79
GUC50
GUA90
GUG18
Ser S6.2%
UCU61
UCC58
UCA54
UCG8
AGU17
AGC37
Pro P5.7%
CCU66
CCC82
CCA59
CCG11
Thr T7.5%
ACU61
ACC101
ACA111
ACG14
Ala A9.1%
GCU88
GCC113
GCA128
GCG18
Tyr Y3.3%
UAU50
UAC74
His H2.8%
CAU30
CAC75
Gln Q2.5%
CAA89
CAG8
Asn N2.9%
AAU47
AAC65
Lys K1.9%
AAA62
AAG12
Asp D2.0%
GAU29
GAC49
Glu E2.5%
GAA77
GAG19
Cys C0.8%
UGU18
UGC14
Trp W3.1%
UGA106
UGG13
Arg R2.1%
CGU9
CGC11
CGA46
CGG13
Gly G6.5%
GGU25
GGC84
GGA87
GGG50
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_027734.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,048 | 977 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,049 | 1,120 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,121 | 2,855 | 1,735 bp | + | 42.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,856 | 2,929 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,930 | 3,904 | 975 bp | + | 44.7% |
| tRNA-Ile | Transfer RNA | 3,909 | 3,977 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,977 | 4,047 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,047 | 4,116 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,117 | 5,162 | 1,046 bp | + | 43.5% |
| tRNA-Trp | Transfer RNA | 5,163 | 5,233 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,234 | 5,302 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,304 | 5,376 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,420 | 5,485 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,486 | 5,556 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,558 | 7,108 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,110 | 7,180 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,183 | 7,253 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,261 | 7,951 | 691 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,952 | 8,026 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,028 | 8,195 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,186 | 8,868 | 683 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,869 | 9,653 | 785 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 9,654 | 9,724 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,725 | 10,073 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 10,074 | 10,142 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,143 | 10,439 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,433 | 11,810 | 1,378 bp | + | 43.6% |
| tRNA-His | Transfer RNA | 11,811 | 11,879 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,880 | 11,946 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,949 | 12,021 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,022 | 13,860 | 1,839 bp | + | 41.4% |
| ND6 | Protein-coding gene | 13,857 | 14,378 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,380 | 14,448 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,453 | 15,593 | 1,141 bp | + | 45.1% |
| tRNA-Thr | Transfer RNA | 15,594 | 15,664 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,664 | 15,732 | 69 bp | − | – |
| D-loop | Control region | 15,733 | 16,992 | 1,260 bp | – | 32.1% |