Neoniphon sammara
Sammara squirrelfish
GC content
43.14%
Whole genome
Non-coding
1,135 bp
D-loop 1,066 bp
Where Sammara squirrelfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sammara squirrelfish has the 2,002nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,743 bp
- GC skew (G − C) / (G + C)
- −0.304
- AT skew (A − T) / (A + T)
- +0.081
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,743 bp
Protein-coding11,408 bp
12S rRNA949 bp
16S rRNA1,703 bp
All tRNA1,548 bp
D-loop1,066 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.36% | −0.398 | +0.010 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 46.23% | −0.512 | +0.119 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.68% | −0.190 | −0.069 | |||||
| COX2Cytochrome c oxidase subunit II | 692 bp | 43.93% | −0.303 | +0.062 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.88% | −0.522 | +0.069 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.67% | −0.453 | −0.048 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.48% | −0.305 | 0.000 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 45.56% | −0.396 | −0.095 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.347 | −0.124 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.29% | −0.418 | +0.089 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.47% | −0.426 | +0.074 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.518 | +0.503 | |||||
| CYTBCytochrome b | 1,141 bp | 43.56% | −0.364 | −0.016 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 47.73% | −0.099 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,703 bp | 42.87% | −0.112 | +0.266 | |||||
| D-loopControl region (D-loop) | 1,066 bp | 31.11% | −0.208 | +0.040 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU84
UUC147
Leu L17.3%
UUA96
UUG19
CUU150
CUC119
CUA237
CUG37
Ile I7.2%
AUU145
AUC130
Met M4.4%
AUA125
AUG41
Val V5.6%
GUU65
GUC49
GUA83
GUG16
Ser S6.3%
UCU48
UCC62
UCA75
UCG1
AGU11
AGC41
Pro P5.7%
CCU55
CCC73
CCA87
CCG3
Thr T8.3%
ACU48
ACC119
ACA142
ACG6
Ala A8.6%
GCU62
GCC155
GCA101
GCG9
Tyr Y3.0%
UAU51
UAC63
His H2.8%
CAU35
CAC70
Gln Q2.7%
CAA96
CAG8
Asn N3.3%
AAU44
AAC80
Lys K2.0%
AAA73
AAG4
Asp D2.0%
GAU28
GAC48
Glu E2.7%
GAA86
GAG17
Cys C0.6%
UGU6
UGC17
Trp W3.1%
UGA113
UGG6
Arg R1.9%
CGU4
CGC16
CGA48
CGG6
Gly G6.3%
GGU46
GGC59
GGA111
GGG24
Stop 0.2%
UAA7
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_063501.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,018 | 949 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,793 | 1,703 bp | + | 42.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,794 | 2,867 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,868 | 3,842 | 975 bp | + | 46.4% |
| tRNA-Ile | Transfer RNA | 3,851 | 3,922 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,922 | 3,992 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,992 | 4,060 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,061 | 5,107 | 1,047 bp | + | 46.2% |
| tRNA-Trp | Transfer RNA | 5,108 | 5,179 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,181 | 5,249 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,251 | 5,323 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,355 | 5,421 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,422 | 5,489 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,491 | 7,041 | 1,551 bp | + | 42.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,042 | 7,112 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,116 | 7,184 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,197 | 7,888 | 692 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,889 | 7,962 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,964 | 8,131 | 168 bp | + | 39.9% |
| ATP6 | Protein-coding gene | 8,122 | 8,805 | 684 bp | + | 41.7% |
| COX3 | Protein-coding gene | 8,805 | 9,589 | 785 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,590 | 9,660 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,661 | 10,009 | 349 bp | + | 45.6% |
| tRNA-Arg | Transfer RNA | 10,010 | 10,078 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,084 | 10,380 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,374 | 11,754 | 1,381 bp | + | 42.3% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,824 | 11,891 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,893 | 11,965 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,966 | 13,804 | 1,839 bp | + | 42.5% |
| ND6 | Protein-coding gene | 13,800 | 14,321 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,322 | 14,390 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,396 | 15,536 | 1,141 bp | + | 43.6% |
| tRNA-Thr | Transfer RNA | 15,537 | 15,608 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,608 | 15,677 | 70 bp | − | – |
| D-loop | Control region | 15,678 | 16,743 | 1,066 bp | – | 31.1% |