MitoAge

Neotoma albigula

White-throated woodrat

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Maximum lifespan
9.5 yr
AnAge record
mtDNA size
16,301 bp
RefSeq NC_068809.1
GC content
39.45%
Whole genome
Non-coding
948 bp
Including the D-loop

Where White-throated woodrat sits among 2,335 species

Whole-genome GC content against maximum lifespan. White-throated woodrat has the 1,632nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %White-throated woodrat
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,301 bp
GC skew (G − C) / (G + C)
−0.350
AT skew (A − T) / (A + T)
+0.126

Life history

Maximum lifespan
9.5 years
Adult weight
209 g
Birth weight
11.5 g
Basal metabolic rate
0.735 W
Body temperature
36 °C
Female sexual maturity
84 days
Male sexual maturity
101 days
Gestation or incubation
29 days
Litter or clutch size
2
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02902)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,301 bp
Protein-coding11,337 bp
12S rRNA955 bp
16S rRNA1,565 bp
All tRNA1,499 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1952 bp31.7%26.8%11.2%30.3%41.49%−0.458+0.084
ND2NADH dehydrogenase subunit 21,038 bp37.2%23.2%7.2%32.4%39.60%−0.635+0.231
COX1Cytochrome c oxidase subunit I1,545 bp28.7%29.8%16.3%25.2%41.55%−0.215−0.019
COX2Cytochrome c oxidase subunit II684 bp33.5%25.0%14.3%27.2%41.52%−0.310+0.145
ATP8ATP synthase F0 subunit 8204 bp39.2%27.0%4.9%28.9%33.82%−0.710+0.185
ATP6ATP synthase F0 subunit 6681 bp31.6%28.6%10.9%28.9%39.79%−0.454+0.049
COX3Cytochrome c oxidase subunit III784 bp31.1%26.8%14.2%27.9%42.09%−0.327+0.075
ND3NADH dehydrogenase subunit 3348 bp33.3%27.0%10.6%29.0%39.66%−0.464+0.105
ND4LNADH dehydrogenase subunit 4L297 bp31.6%29.3%11.1%27.9%39.06%−0.431+0.039
ND4NADH dehydrogenase subunit 41,378 bp34.8%26.8%10.2%28.2%38.46%−0.468+0.130
ND5NADH dehydrogenase subunit 51,812 bp34.5%26.7%9.8%29.0%38.85%−0.494+0.128
ND6NADH dehydrogenase subunit 6525 bp39.0%19.2%8.6%33.1%41.71%−0.589+0.340
CYTBCytochrome b1,144 bp31.4%26.0%12.9%29.6%42.57%−0.392+0.093
12S rRNA12S ribosomal RNA955 bp37.2%25.1%17.5%20.2%37.70%−0.072+0.193
16S rRNA16S ribosomal RNA1,565 bp37.3%25.0%17.3%20.4%37.76%−0.083+0.197

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU80
UUC148
Leu L15.1%
UUA93
UUG10
CUU67
CUC61
CUA307
CUG35
Ile I10.0%
AUU179
AUC201
Met M6.0%
AUA187
AUG39
Val V4.3%
GUU31
GUC27
GUA86
GUG19
Ser S7.8%
UCU45
UCC75
UCA116
UCG5
AGU16
AGC39
Pro P5.3%
CCU32
CCC48
CCA117
CCG3
Thr T9.0%
ACU47
ACC102
ACA185
ACG9
Ala A6.3%
GCU45
GCC102
GCA87
GCG4
Tyr Y3.2%
UAU42
UAC80
His H2.7%
CAU24
CAC78
Gln Q2.1%
CAA75
CAG4
Asn N4.3%
AAU32
AAC133
Lys K2.5%
AAA91
AAG5
Asp D1.9%
GAU25
GAC47
Glu E2.6%
GAA76
GAG21
Cys C0.8%
UGU9
UGC20
Trp W2.7%
UGA93
UGG9
Arg R1.7%
CGU8
CGC11
CGA43
CGG2
Gly G5.6%
GGU34
GGC49
GGA101
GGG28
Stop 0.2%
UAA8
UAG1
AGA0
AGG0

Genome map

37 annotated features in NC_068809.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA88695469 bp+–
12S rRNARibosomal RNA9561,910955 bp+37.7%
tRNA-ValTransfer RNA1,9111,98171 bp+–
16S rRNARibosomal RNA1,9823,5461,565 bp+37.8%
tRNA-Leu (CUN)Transfer RNA3,5473,62175 bp+–
ND1Protein-coding gene3,6224,573952 bp+41.5%
tRNA-IleTransfer RNA4,5764,64570 bp+–
tRNA-GlnTransfer RNA4,6434,71068 bp−–
tRNA-MetTransfer RNA4,7184,78669 bp+–
ND2Protein-coding gene4,7875,8241,038 bp+39.6%
tRNA-TrpTransfer RNA5,8275,89468 bp+–
tRNA-AlaTransfer RNA5,8975,96569 bp−–
tRNA-AsnTransfer RNA5,9686,03669 bp−–
tRNA-CysTransfer RNA6,0686,13366 bp−–
tRNA-TyrTransfer RNA6,1346,20168 bp−–
COX1Protein-coding gene6,2037,7471,545 bp+41.6%
tRNA-Ser (UCN)Transfer RNA7,7457,81672 bp−–
tRNA-AspTransfer RNA7,8177,88569 bp+–
COX2Protein-coding gene7,8868,569684 bp+41.5%
tRNA-LysTransfer RNA8,5728,63564 bp+–
ATP8Protein-coding gene8,6378,840204 bp+33.8%
ATP6Protein-coding gene8,7989,478681 bp+39.8%
COX3Protein-coding gene9,47810,261784 bp+42.1%
tRNA-GlyTransfer RNA10,26310,33371 bp+–
ND3Protein-coding gene10,33410,681348 bp+39.7%
tRNA-ArgTransfer RNA10,68510,75066 bp+–
ND4LProtein-coding gene10,75311,049297 bp+39.1%
ND4Protein-coding gene11,04312,4201,378 bp+38.5%
tRNA-HisTransfer RNA12,42112,48868 bp+–
tRNA-Ser (AGY)Transfer RNA12,49012,54657 bp+–
tRNA-Leu (CUN)Transfer RNA12,54712,61670 bp+–
ND5Protein-coding gene12,61714,4281,812 bp+38.9%
ND6Protein-coding gene14,42514,949525 bp−41.7%
tRNA-GluTransfer RNA14,95015,01869 bp−–
CYTBProtein-coding gene15,02416,1671,144 bp+42.6%
tRNA-ThrTransfer RNA16,16816,23467 bp+–
tRNA-ProTransfer RNA16,23516,30167 bp−–

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