MitoAge

Netta rufina

Red-crested pochard

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Maximum lifespan
12.9 yr
AnAge record
mtDNA size
16,625 bp
RefSeq NC_024922.1
GC content
47.96%
Whole genome
Non-coding
1,121 bp
D-loop 1,070 bp

Where Red-crested pochard sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red-crested pochard has the 1,375th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red-crested pochard
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,625 bp
GC skew (G − C) / (G + C)
−0.359
AT skew (A − T) / (A + T)
+0.138

Life history

Maximum lifespan
12.9 years
Adult weight
1.1 kg
Female sexual maturity
365 days
Male sexual maturity
365 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00354)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,625 bp
Protein-coding11,387 bp
12S rRNA983 bp
16S rRNA1,608 bp
All tRNA1,537 bp
D-loop1,070 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp25.4%24.4%15.7%34.5%50.20%−0.373+0.018
ND2NADH dehydrogenase subunit 21,039 bp29.4%21.9%12.7%36.0%48.70%−0.478+0.144
COX1Cytochrome c oxidase subunit I1,551 bp27.1%25.3%16.2%31.3%47.58%−0.317+0.036
COX2Cytochrome c oxidase subunit II687 bp29.7%25.8%14.1%30.4%44.54%−0.366+0.071
ATP8ATP synthase F0 subunit 8168 bp32.1%17.3%9.5%41.1%50.60%−0.624+0.301
ATP6ATP synthase F0 subunit 6684 bp29.2%23.7%10.4%36.7%47.08%−0.559+0.105
COX3Cytochrome c oxidase subunit III784 bp26.4%23.1%16.6%33.9%50.51%−0.343+0.067
ND3NADH dehydrogenase subunit 3351 bp26.5%24.5%15.1%33.9%49.00%−0.384+0.039
ND4LNADH dehydrogenase subunit 4L297 bp25.6%23.6%16.2%34.7%50.84%−0.364+0.041
ND4NADH dehydrogenase subunit 41,378 bp28.8%23.3%12.4%35.5%47.90%−0.482+0.106
ND5NADH dehydrogenase subunit 51,824 bp29.9%21.3%13.8%35.0%48.79%−0.434+0.167
ND6NADH dehydrogenase subunit 6522 bp40.2%9.8%11.5%38.5%50.00%−0.540+0.609
CYTBCytochrome b1,143 bp26.5%22.9%14.7%35.9%50.57%−0.419+0.073
12S rRNA12S ribosomal RNA983 bp32.6%18.6%20.1%28.7%48.83%−0.175+0.272
16S rRNA16S ribosomal RNA1,608 bp34.5%19.8%19.8%25.9%45.77%−0.133+0.271
D-loopControl region (D-loop)1,070 bp27.8%24.1%15.7%32.4%48.13%−0.348+0.070

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU55
UUC171
Leu L17.6%
UUA47
UUG18
CUU59
CUC159
CUA296
CUG89
Ile I7.2%
AUU69
AUC206
Met M4.5%
AUA118
AUG53
Val V5.1%
GUU31
GUC59
GUA73
GUG30
Ser S7.3%
UCU24
UCC91
UCA91
UCG15
AGU10
AGC48
Pro P6.1%
CCU26
CCC96
CCA96
CCG13
Thr T8.4%
ACU42
ACC149
ACA119
ACG8
Ala A8.6%
GCU51
GCC167
GCA97
GCG12
Tyr Y2.8%
UAU27
UAC80
His H2.8%
CAU11
CAC96
Gln Q2.4%
CAA70
CAG23
Asn N3.2%
AAU16
AAC105
Lys K2.4%
AAA84
AAG6
Asp D1.6%
GAU8
GAC53
Glu E2.5%
GAA74
GAG20
Cys C0.8%
UGU3
UGC26
Trp W2.8%
UGA95
UGG12
Arg R1.9%
CGU1
CGC17
CGA42
CGG12
Gly G5.8%
GGU14
GGC85
GGA79
GGG44
Stop 0.3%
UAA7
UAG1
AGA0
AGG2

Genome map

38 annotated features in NC_024922.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (48.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,053983 bp+48.8%
tRNA-ValTransfer RNA1,0541,12370 bp+–
16S rRNARibosomal RNA1,1242,7311,608 bp+45.8%
tRNA-Leu (UUR)Transfer RNA2,7322,80574 bp+–
ND1Protein-coding gene2,8103,787978 bp+50.2%
tRNA-IleTransfer RNA3,7863,85772 bp+–
tRNA-GlnTransfer RNA3,8663,93671 bp−–
tRNA-MetTransfer RNA3,9364,00469 bp+–
ND2Protein-coding gene4,0055,0431,039 bp+48.7%
tRNA-TrpTransfer RNA5,0445,11875 bp+–
tRNA-AlaTransfer RNA5,1225,19069 bp−–
tRNA-AsnTransfer RNA5,1935,26573 bp−–
tRNA-CysTransfer RNA5,2665,33166 bp−–
tRNA-TyrTransfer RNA5,3315,40171 bp−–
COX1Protein-coding gene5,4036,9531,551 bp+47.6%
tRNA-Ser (UCN)Transfer RNA6,9457,01975 bp−–
tRNA-AspTransfer RNA7,0227,09069 bp+–
COX2Protein-coding gene7,0927,778687 bp+44.5%
tRNA-LysTransfer RNA7,7807,84869 bp+–
ATP8Protein-coding gene7,8508,017168 bp+50.6%
ATP6Protein-coding gene8,0088,691684 bp+47.1%
COX3Protein-coding gene8,6919,474784 bp+50.5%
tRNA-GlyTransfer RNA9,4759,54369 bp+–
ND3Protein-coding gene9,5449,895352 bp+49.0%
tRNA-ArgTransfer RNA9,8979,96670 bp+–
ND4LProtein-coding gene9,96710,263297 bp+50.8%
ND4Protein-coding gene10,25711,6341,378 bp+47.9%
tRNA-HisTransfer RNA11,63511,70369 bp+–
tRNA-Ser (AGY)Transfer RNA11,70911,76961 bp+–
tRNA-Leu (CUN)Transfer RNA11,76911,83971 bp+–
ND5Protein-coding gene11,84013,6631,824 bp+48.8%
CYTBProtein-coding gene13,66314,8051,143 bp+50.6%
tRNA-ThrTransfer RNA14,80814,87669 bp+–
tRNA-ProTransfer RNA14,88714,95670 bp−–
ND6Protein-coding gene14,96715,488522 bp−50.0%
tRNA-GluTransfer RNA15,48915,55668 bp−–
D-loopControl region15,55616,6251,070 bp–48.1%

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