Nibea albiflora
Yellow drum
GC content
47.72%
Whole genome
Non-coding
907 bp
D-loop 823 bp
Where Yellow drum sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellow drum has the 2,030th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,499 bp
- GC skew (G − C) / (G + C)
- −0.291
- AT skew (A − T) / (A + T)
- +0.010
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,499 bp
Protein-coding11,397 bp
12S rRNA949 bp
16S rRNA1,704 bp
All tRNA1,547 bp
D-loop823 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.92% | −0.379 | −0.096 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 50.34% | −0.490 | −0.006 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 49.45% | −0.210 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.280 | −0.011 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.297 | +0.085 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.35% | −0.438 | −0.095 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.32% | −0.301 | −0.056 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.14% | −0.394 | −0.195 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.325 | −0.175 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.82% | −0.366 | −0.030 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 47.97% | −0.408 | −0.043 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.451 | +0.371 | |||||
| CYTBCytochrome b | 1,141 bp | 48.12% | −0.355 | −0.128 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 49.00% | −0.080 | +0.178 | |||||
| 16S rRNA16S ribosomal RNA | 1,704 bp | 46.36% | −0.144 | +0.208 | |||||
| D-loopControl region (D-loop) | 823 bp | 38.28% | −0.162 | +0.012 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU104
UUC142
Leu L17.9%
UUA66
UUG17
CUU160
CUC208
CUA162
CUG67
Ile I6.7%
AUU137
AUC119
Met M3.6%
AUA75
AUG61
Val V6.0%
GUU65
GUC80
GUA53
GUG29
Ser S6.1%
UCU32
UCC85
UCA48
UCG14
AGU10
AGC43
Pro P5.8%
CCU62
CCC109
CCA43
CCG8
Thr T8.1%
ACU42
ACC144
ACA99
ACG22
Ala A9.2%
GCU47
GCC187
GCA99
GCG18
Tyr Y2.9%
UAU40
UAC69
His H2.7%
CAU27
CAC77
Gln Q2.5%
CAA76
CAG19
Asn N2.9%
AAU40
AAC69
Lys K1.9%
AAA63
AAG10
Asp D2.0%
GAU26
GAC49
Glu E2.7%
GAA77
GAG26
Cys C0.7%
UGU8
UGC19
Trp W3.0%
UGA96
UGG19
Arg R2.1%
CGU13
CGC16
CGA43
CGG7
Gly G6.6%
GGU36
GGC99
GGA72
GGG44
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_015205.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,019 | 949 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,025 | 1,096 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,098 | 2,801 | 1,704 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,803 | 2,876 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,877 | 3,851 | 975 bp | + | 48.9% |
| tRNA-Ile | Transfer RNA | 3,856 | 3,925 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,925 | 3,995 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,995 | 4,063 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,064 | 5,108 | 1,045 bp | + | 50.3% |
| tRNA-Trp | Transfer RNA | 5,109 | 5,179 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,180 | 5,248 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,251 | 5,323 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,362 | 5,427 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,428 | 5,497 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,499 | 7,055 | 1,557 bp | + | 49.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,051 | 7,121 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,125 | 7,193 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,202 | 7,892 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,893 | 7,967 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,969 | 8,136 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,127 | 8,810 | 684 bp | + | 46.4% |
| COX3 | Protein-coding gene | 8,810 | 9,594 | 785 bp | + | 50.3% |
| tRNA-Gly | Transfer RNA | 9,595 | 9,665 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,666 | 10,014 | 349 bp | + | 50.1% |
| tRNA-Arg | Transfer RNA | 10,015 | 10,083 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,084 | 10,380 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,374 | 11,754 | 1,381 bp | + | 49.8% |
| tRNA-His | Transfer RNA | 11,755 | 11,823 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,824 | 11,890 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,896 | 11,968 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,969 | 13,792 | 1,824 bp | + | 48.0% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,312 | 14,380 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,391 | 15,531 | 1,141 bp | + | 48.1% |
| tRNA-Thr | Transfer RNA | 15,532 | 15,603 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,608 | 15,676 | 69 bp | − | – |
| D-loop | Control region | 15,677 | 16,499 | 823 bp | – | 38.3% |