MitoAge

Nipponia nippon

Crested ibis

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Maximum lifespan
25.8 yr
AnAge record
mtDNA size
16,732 bp
RefSeq NC_008132.1
GC content
46.08%
Whole genome
Non-coding
1,239 bp
D-loop 1,160 bp

Where Crested ibis sits among 2,335 species

Whole-genome GC content against maximum lifespan. Crested ibis has the 608th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Crested ibis
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,732 bp
GC skew (G − C) / (G + C)
−0.381
AT skew (A − T) / (A + T)
+0.129

Life history

Maximum lifespan
25.8 years
Adult weight
1.9 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01382)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,732 bp
Protein-coding11,377 bp
12S rRNA977 bp
16S rRNA1,603 bp
All tRNA1,547 bp
D-loop1,160 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.1%27.4%13.4%32.1%45.50%−0.411−0.006
ND2NADH dehydrogenase subunit 21,040 bp31.2%23.6%10.2%35.1%45.29%−0.550+0.139
COX1Cytochrome c oxidase subunit I1,551 bp28.0%24.8%16.7%30.5%47.20%−0.292+0.062
COX2Cytochrome c oxidase subunit II684 bp30.4%23.4%14.6%31.6%46.20%−0.367+0.130
ATP8ATP synthase F0 subunit 8168 bp32.7%20.8%5.4%41.1%46.43%−0.769+0.222
ATP6ATP synthase F0 subunit 6684 bp29.5%23.0%10.8%36.7%47.52%−0.545+0.125
COX3Cytochrome c oxidase subunit III784 bp27.9%26.0%15.1%31.0%46.05%−0.346+0.035
ND3NADH dehydrogenase subunit 3351 bp27.4%26.8%12.3%33.6%45.87%−0.466+0.011
ND4LNADH dehydrogenase subunit 4L297 bp27.3%22.9%13.8%36.0%49.83%−0.446+0.087
ND4NADH dehydrogenase subunit 41,378 bp30.8%22.6%11.0%35.7%46.66%−0.530+0.154
ND5NADH dehydrogenase subunit 51,815 bp31.6%21.7%11.7%35.0%46.72%−0.498+0.185
ND6NADH dehydrogenase subunit 6522 bp36.4%10.2%11.5%42.0%53.45%−0.570+0.564
CYTBCytochrome b1,143 bp26.6%23.6%12.7%37.1%49.78%−0.490+0.059
12S rRNA12S ribosomal RNA977 bp31.3%20.9%20.8%27.0%47.80%−0.131+0.200
16S rRNA16S ribosomal RNA1,603 bp34.2%21.3%18.8%25.8%44.54%−0.157+0.233
D-loopControl region (D-loop)1,160 bp29.7%29.4%15.0%25.9%40.95%−0.267+0.004

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU54
UUC161
Leu L17.8%
UUA57
UUG15
CUU72
CUC174
CUA311
CUG45
Ile I7.6%
AUU67
AUC221
Met M4.4%
AUA134
AUG33
Val V4.4%
GUU29
GUC52
GUA58
GUG29
Ser S7.5%
UCU31
UCC87
UCA99
UCG14
AGU9
AGC44
Pro P5.7%
CCU25
CCC83
CCA100
CCG9
Thr T9.3%
ACU39
ACC164
ACA144
ACG6
Ala A7.8%
GCU43
GCC145
GCA101
GCG8
Tyr Y2.9%
UAU30
UAC81
His H2.9%
CAU30
CAC80
Gln Q2.6%
CAA87
CAG12
Asn N3.4%
AAU12
AAC118
Lys K2.3%
AAA79
AAG8
Asp D1.6%
GAU16
GAC46
Glu E2.5%
GAA75
GAG19
Cys C0.7%
UGU4
UGC21
Trp W2.9%
UGA88
UGG21
Arg R1.9%
CGU11
CGC18
CGA37
CGG5
Gly G6.0%
GGU23
GGC75
GGA81
GGG47
Stop 0.3%
UAA5
UAG2
AGA1
AGG2

Genome map

38 annotated features in NC_008132.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1601,160 bp–41.0%
tRNA-PheTransfer RNA1,1611,23070 bp+–
12S rRNARibosomal RNA1,2312,207977 bp+47.8%
tRNA-ValTransfer RNA2,2082,27972 bp+–
16S rRNARibosomal RNA2,2803,8821,603 bp+44.5%
tRNA-Leu (UUR)Transfer RNA3,8833,95775 bp+–
ND1Protein-coding gene3,9704,947978 bp+45.5%
tRNA-IleTransfer RNA4,9465,01772 bp+–
tRNA-GlnTransfer RNA5,0275,09771 bp−–
tRNA-MetTransfer RNA5,0975,16569 bp+–
ND2Protein-coding gene5,1666,2051,040 bp+45.3%
tRNA-TrpTransfer RNA6,2066,27671 bp+–
tRNA-AlaTransfer RNA6,2786,34669 bp−–
tRNA-AsnTransfer RNA6,3496,42274 bp−–
tRNA-CysTransfer RNA6,4256,49167 bp−–
tRNA-TyrTransfer RNA6,4916,56171 bp−–
COX1Protein-coding gene6,5638,1131,551 bp+47.2%
tRNA-Ser (UCN)Transfer RNA8,1058,17874 bp−–
tRNA-AspTransfer RNA8,1818,24969 bp+–
COX2Protein-coding gene8,2518,934684 bp+46.2%
tRNA-LysTransfer RNA8,9369,00772 bp+–
ATP8Protein-coding gene9,0099,176168 bp+46.4%
ATP6Protein-coding gene9,1679,850684 bp+47.5%
COX3Protein-coding gene9,85010,633784 bp+46.1%
tRNA-GlyTransfer RNA10,63410,70269 bp+–
ND3Protein-coding gene10,70311,054352 bp+45.9%
tRNA-ArgTransfer RNA11,05711,12569 bp+–
ND4LProtein-coding gene11,12711,423297 bp+49.8%
ND4Protein-coding gene11,41712,7941,378 bp+46.7%
tRNA-HisTransfer RNA12,79512,86470 bp+–
tRNA-Ser (AGY)Transfer RNA12,86512,93066 bp+–
tRNA-Leu (CUN)Transfer RNA12,93013,00071 bp+–
ND5Protein-coding gene13,00114,8151,815 bp+46.7%
CYTBProtein-coding gene14,82615,9681,143 bp+49.8%
tRNA-ThrTransfer RNA15,97316,04270 bp+–
tRNA-ProTransfer RNA16,06016,13071 bp−–
ND6Protein-coding gene16,14016,661522 bp−53.5%
tRNA-GluTransfer RNA16,66516,73268 bp−–

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